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19 protocols using easysep mouse cd11b positive selection kit

1

Isolation of CD11b+ Cells from Tumors

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Tumors were mechanically disrupted and incubated in collagenase IV solution 1mg/mL for 1h at 37°C. Cells were filtered through a 100 μM nylon mesh cell strainer and CD11b+ cells were isolated by magnetic labeling following manufacturer's procedure (EasySep™ Mouse CD11b Positive Selection Kit, StemCell, 18770, Vancouver, BC, Canada).
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2

Isolation and Expansion of Murine Microglia

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Microglia were isolated from the brain and spinal cords of 5–7 weeks old mice according Ponomarev et al. (24 (link)) with the following modifications. Instead of homogenization, CNS tissue was scissor-minced in 1 × HBSS (1.5 mL/brain and spinal cord) and digested with Clostridium histolyticum collagenase type IV (300 U/mL final) + 5 U/ml DNAse (Sigma) for 30 min prior to filtration through a 70 micron sieve. Isolated microglia cells were plated in 12-well plates (0.25 × 106 cells per well) in complete DMEM (Cellgro) (containing 10% FCS, 2 mM glutamine, 50 μM 2-mercaptoethanol, 50 μg/ml gentamicin, all from Life Technologies) that also contained 10 ng/ml macrophage colony-stimulating factor (M-CSF) (R&D Systems). Microglia were expanded as described (24 (link)), with the exception that at the time of the first passage, cells were detached from the plate using a cell scraper and were purified using EasySep™ Mouse CD11b Positive Selection Kit (STEMCELL Technologies) prior to further expansion in 12-well plates (0.1 × 106/well) in complete DMEM containing M-CSF (10 ng/ml). Cultured microglia were used for experimental studies after 2 or 3 passages.
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3

Isolation and Stimulation of Peripheral Macrophages

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Peripheral circulating macrophages were isolated from splenic tissue. Single-cell suspensions were incubated with fluorescein isothiocyanate–labeled anti-CD3, anti-CD19, anti-NK1.1, and anti-Ly6G (BioLegend) followed by EasySep Mouse Streptavidin RapidSpheres (Stem Cell Technologies; 19860). Flow-through was then incubated with EasySep Mouse CD11b Positive Selection Kit (Stem Cell Technologies; 18970) to isolate the nonneutrophil, non–natural killer cells, nonlymphocyte, CD11b+ cells. When indicated, peripheral macrophages were stimulated with/without IFNβ (PBL Assay Science; catalog no. 12400–01; 100 U/ml). For JAK1 and JAK3 inhibition, cells were treated with 50 nM tofacitinib (Cayman Chemicals) at the time of stimulation with IFNβ. Cells were saved in Trizol (Invitrogen) for quantitative RT-PCR analyses or processed for chromatin immunoprecipitation as described below.
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4

Isolation and Migration of CD11b+ Cells

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Mouse splenic CD11b+ cells were isolated using the EasySep mouse CD11b positive selection kit (Stemcell Tech, Vancouver, BC, Canada). Cell migration was assessed using 24-well Transwell plates as described previously.24 (link)
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5

Isolation of Murine Bone Marrow Monocytes

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Primary bone marrow monocytes were isolated from the bone marrow of femur and tibiae of four-week-old C57BL/six female mice [51 (link)]. Mice were euthanized and femurs and tibiae were harvested and cleaned free of soft tissue. Bone ends were removed, and bone marrow was flushed using αMEM (Gibco) plus 1% 100 U/mL penicillin/100 mg/mL streptomycin (Gibco). A total of 10 femurs and 10 tibiae were flushed. Bone marrow aspirate was plated in osteoblast growth medium (αMEM (Gibco) supplemented with 10% FBS (HyClone) and 1% 100 U/mL penicillin/100 mg/mL streptomycin (Gibco)) for 24 h.
After 24 h, nonadherent cells were harvested by collecting the medium and centrifuging for 10 min at 1000 rpm. Cells were resuspended in 2 mL of 1X PBS plus 5% FBS (HyClone) for separation, as previously described [51 (link)]. CD11b+ mononuclear cells were collected using the EasySep™ Mouse CD11b Positive Selection Kit (STEMCELL Technologies, Vancouver, Canada). CD11b+ cells were maintained in a medium of αMEM (Gibco), 10% FBS (HyClone), and 1% 100 U/mL penicillin/100 mg/mL streptomycin (Gibco) plus 10 ng/mL M-CSF (PeproTech, Rocky Hill, NJ, USA) [51 (link)]. These CD11b+ cells were used as a source of enriched osteoclast precursors.
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6

Isolation and Enrichment of Tumor-Infiltrating Lymphocytes

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Dissected orthotopic pancreatic tumors were collected following mice sacrifice on day 20 from tumor inoculation for analysis of tumor infiltrating lymphocytes (TILs). Each tumor was digested by using a tumor dissociation kit and processed sequentially through 40-µm and 100-µm nylon filters and brought to a volume of 20 mL of CTL medium. Suspensions were centrifuged at 1,500 rpm for 5 min. Cell pellets were suspended in 4 mL of ammonium-chloride-potassium (ACK) lysis (Quality Biological) and subsequently spun at 1,500 rpm for 5 min. Cell pellets were then resuspended in 6 mL 80% Percoll (GE Healthcare LifeSciences), overlaid with 6 mL 40% Percoll and centrifuged at room temperature for 25 min at 3,200 rpm without brake. The lymphocyte layer was removed and quenched with 30 mL of CTL media. Isolated TILs were enriched for CD11b+ cells using the EasySep™ Mouse CD11b Positive Selection Kit (Stemcell Technologies).
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7

Isolation of Colonic Cell Subsets

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Colonic cells were extracted as described above and subjected to cell debris depletion kit (Miltenyi Biotec) followed by column based magnetic cells separation. For LP and IE cells isolation, cells were subjected to EasySep Mouse CD11b positive selection kit (StemCell) and CD11b+ cells were collected. Negative fraction containing CD11b cells were further subjected to CD45 MACS MicroBeads (Miltenyi Biotec) for CD11b lymphocytes isolation.
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8

Isolation and Culture of Microglia

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Microglia were purified by immunopanning from postnatal day 1 (P1) forebrain and cultured as previously described [21 (link)]. Briefly, after removing the meninges, the brains were washed with PBS and then transferred to 0.25% trypsin-EDTA, followed by gentle agitation for 30 min. The complete media, DMEM/F12 (Gibco, 11320033, Waltham, MA, USA) supplemented with 10% heat-inactivated FBS, 50 U/mL penicillin, 50 μg/mL streptomycin, 2 mM l-glutamine, 100 μM non-essential amino acids and 2 mM sodium pyruvate, were used to stop the trypsinization reaction. A single-cell suspension was obtained by trituration through pipetting. Cell debris and aggregates were removed by passing the single-cell suspension using a 100 μm nylon mesh. The prepared single-cell suspension was cultured in T175 flask for 13 days with complete media change on day 6. Microglia were separated using the EasySep Mouse CD11b Positive Selection kit (StemCell, #18970, Cambridge, MA, USA). The magnetically separated microglia-rich fraction was seeded on 6-well plates with complete media.
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9

Isolation and Characterization of Murine BM-MSCs

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BM-MSCs were isolated from male C57BL/6J mice, aging 6 wk and weighing 15–22 g. The BM-MSCs were cultured following the protocol described before (21 (link)). Briefly, femur and tibia of mice were excised and bone marrow cells were slowly flushed out from the marrow cavity using DMEM medium (Gibco, Grand Island, NY, USA). EasySep Mouse CD11b Positive Selection Kit (StemCell Technologies, Vancouver, Canada) was used to separate mononuclear granulocytes. Afterwards, the remaining cells were continued to be cultured. After culturing for 3 to 4 days and removing the unattached cells, BM-MSCs were cultured until the confluence reached 75% (22 (link)). The surface expression, including CD11b, CD45, CD34, Sca-1, CD105 and CD29 were monitored by flow cytometry as described previously (23 (link)).
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10

Enrichment and Isolation of CD11b+ Cells from Murine Splenocytes

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Mice were subcutaneously injected with 500,000 BRAFV600EPTEN−/− cells and allowed to form tumors. When tumors reached 1000mm3 the mice were euthanized, and their spleens harvested. We enriched CD11b+ cells using the EasySep Mouse CD11b Positive Selection Kit (Stemcell Technologies, 18970). Briefly, the selection cocktail was added to cells and incubated for 5 minutes before RapidSpheres were added and the mixture was incubated for 3 minutes. The sample tubes were inserted into the magnet (“The Big Easy” EasySep Magnet, Stemcell Technologies, 18001) for 5 minutes and the supernatant discarded. Remaining cells were washed with column buffer and subjected to magnetic isolation again. Isolated cells were then stained for Ly6C and Ly6G as described above and sorted on a FACSAria III (Becton Dickinson) instrument. See Supplemental Figure 1 for gating strategy.
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