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10 kda ultrafilter

Manufactured by Merck Group
Sourced in United States

The 10 kDa ultrafilter is a laboratory filtration device designed to separate molecules based on their size. It is capable of retaining molecules larger than 10 kilodaltons (kDa) while allowing smaller molecules to pass through. This device is commonly used in various research and industrial applications that require the separation and purification of macromolecules, such as proteins, peptides, and nucleic acids.

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5 protocols using 10 kda ultrafilter

1

Lignocellulose Catalytic Conversion Protocol

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P. putida KT2400-tacRDL was inoculated from the overnight cultivated seeds into 50 mL LB containing 25 mg/L kanamycin, and cultivated at 37 °C and 220 rpm for 24 h. This expression system is constitutive due to the absence of lacI both in the used plasmid and P. putida KT2400 [23 (link),41 (link)], so it does not need the addition of isopropyl β-d-1-thiogalactopyranoside (IPTG). Cells were removed by centrifugation at 12,000 rpm and the cell-free supernatant was filtered with a 10 kDa ultrafilter (Millipore, Burlington, MA, USA) and concentrated to obtain 1 mL LCC crude enzyme. Cells were disrupted with an automatic sample rapid grinder (Jingxin Technology, Shanghai, China) [42 (link)] and analyzed by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), as with the cell-free supernatant, before and after concentration. Total protein concentration of the crude enzyme was determined with the folin phenol reagent [36 (link)], and the content of LCC was determined by image analysis using online ImageJ [37 (link)] (https://cnij.imjoy.io/ (accessed on 24 February 2022)).
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2

Separation and Purification of LCC and MA

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Cells were removed from the culture broth by centrifugation at 12,000 rpm to obtain the cell-free supernatant containing extracellular LCC and MA. LCC and MA were separated by filtration with 10 kDa ultrafilter (Millipore), wherein LCC was in the concentrate and MA was in the filtrate. Concentrated LCC crude enzyme was used again for PET hydrolysis. MA was separated and purified from the filtrate according to the method reported by Beckham [44 (link)]. The specific steps include: 1, remove color compounds with 5 wt% activated carbon powder; 2, crystallize at pH 2 and 5 °C; 3, redissolve the crystals in ethanol and filtered to remove insoluble salts. Finally, the recovered MA was dried and the purity determined by HPLC.
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3

Characterization of AANATL2 Reaction Products

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The product of the AANATL2-catalyzed reaction was generated by incubating 36 μg of the enzyme for 1 hour in 300 mM Tris-HCl, pH 8.0, 50 mM serotonin or dopamine, and 500 μM oleoyl-CoA. The reaction mixture was passed through a 10 kDa ultrafilter (Millipore) to remove the AANATL2 and resulting protein-free solution injected on an Agilent 6540 liquid chromatography/quadrupole time-of-flight mass spectrometer (LC/QTOF-MS) in positive ion mode. A Kinetex™ 2.6 μm C18 100 Å (50 × 2.1 mm) reverse phase column was used for AANATL2 product separation. Mobile phase A consisted of water with 0.1% formic acid and of mobile phase B consisted of acetonitrile with 0.1% formic acid. A linear gradient of 10% B increasing to 100% B over the course of 5 min, followed by a hold of 3 min at 100% B was used for the LC analysis of the reaction product. The reverse phase column was equilibrated with 10% B for 8 minutes after the run to prepare the column for the subsequent injections.
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4

Characterization of AANATL7-catalyzed Histamine Acetylation

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A Phenomenex Kinetex 2.6 μm C18 100 Å (50 mm × 2.1 mm) reverse phase column coupled to an Agilent 6540 instrument using a liquid chromatography/quadrupole time-of-flight mass spectrometer (LC/QTOF-MS) in positive ion mode was used to characterize the AANATL7-catalyzed product from the substrates acetyl-CoA and histamine. An enzyme reaction mixture containing 300 mM Tris-HCl (pH 8.0), 500 μM acetyl-CoA, 50 mM histamine, and 9.3 μg of AANATL7 in a final volume of 750 μL was incubated for 30 min at 22 °C. Following the 30 min incubation period, AANATL7 was removed from the reaction mixture using a Millipore 10 kDa ultrafilter in which the reaction product flowed through the filter while AANATL7 was retained in the hold-up volume on the filter. The final reaction product was then injected onto the LC/QTOF-MS instrument to analyze the retention time and high-resolution mass. The resulting retention time and high-resolution mass for the reaction product were compared to those of a commercial standard of Nω-acetylhistamine. The experimental conditions for LC/QTOF-MS analysis are reported in ref 4 (link).
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5

MFGM Protein Trypsin Digestion Protocol

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The methods of trypsin digestion of MFGM proteins were performed as previously described (Li et al., 2019) . Briefly, MFGM proteins (600 μg) were added to the mixture solution consisting of 4% SDS, 100 mM Tris-HCl (pH 8.0), and 100 mM dithiothreitol. The mixture was then heated at 90°C for 10 min. The samples were statically positioned and cooled to 20°C. Each sample was then loaded onto a 10-kDa ultrafilter (Millipore) containing 200 μL of urea-Tris (UT; 8 M urea and 150 mM Tris-HCl; pH 8.0) buffer. The sample mixture was centrifuged (14,000 × g, 30 min, 4°C) and washed with UT buffer. Iodoacetamide (50 mM final concentration in UT buffer) was added to the ultrafilter and mixed with the sample for 1 min. Subsequently, the sample mixture was transferred to a dark environment and incubated at 20°C for 30 min. The incubated mixture samples were centrifuged (14,000 × g, 15 min, 4°C) and washed with 100 μL of UT buffer. This step was repeated twice. The filter was then pre-washed by adding dissolution buffer (UT buffer and 25 mM NH 4 HCO 3 ). The protein was digested at 37°C for 24 h by adding 40 μL of trypsin to the filter. The digested samples were centrifuged (14,000 × g, 15 min, 4°C), and the peptide segments were collected for analysis. The absorbance of the peptides was measured at 280 nm.
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