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Applied biosystems 7500 manager software v2

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Applied Biosystems 7500 Manager software v2.3 is a platform for managing and analyzing data from the Applied Biosystems 7500 Real-Time PCR System. The software provides tools for instrument control, data acquisition, and data analysis.

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2 protocols using applied biosystems 7500 manager software v2

1

Quantifying Gene Expression in PBMC

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Total RNA was isolated from PBMCs using TRIzol® reagent (Invitrogen; Thermo Fisher Scientific, Inc.) at 4°C for 15 min according to the manufacturer's instructions. RNA concentrations were measured using a Nano-Drop ND-1000 instrument (Thermo Fisher Scientific, Inc.). The quality of RNA was determined via the optical density 260/280 ratio. RNA integrity was measured via 1% agarose gel electrophoresis. RT was performed to synthesize the cDNA with random primers in a ReverTraAca® RT-qPCR kit (Toyobo Life Science), which contained oligo-dT and random primers, according to the manufacturer's instructions. RT-qPCR was performed in triplicate using TB GreenTM Premix Ex Taq II (Takara Bio, Inc.). The thermocycling conditions were as follows: Initial denaturation at 95°C for 3 min, followed by 40 cycles at 95°C for 12 sec, 62°C for 40 sec, and 72°C for 32 sec. The primer sequences are presented in Table SI. The expression level of each gene was normalized to the endogenous expression level of the β-actin transcript and was calculated using 2−∆∆Cq method (32 (link)). The data were analyzed using Applied Biosystems 7500 Manager software v2.3 (Thermo Fisher Scientific, Inc.).
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2

Quantifying mRNA Expression Profiles

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Total RNA was isolated from PBMCs with TRIzol reagent (Invitrogen, California, USA) according to the manufacturer's instructions. Reverse transcription (Toyobo, Osaka, Japan) was performed to synthesize cDNA according to the manufacturer's instructions using the random and oligo-dT primers provided in the ReverTraAca® qPCR RT kit (Toyobo). qRT-PCR was performed using TaKaRa TB Green™ Premix Ex Taq II (TaKaRa, Osaka, Japan). The primer sequences used for qRT-PCR were as follows: MAFTRR, sense, 5′-TACCTGCTAGGCTCGTCCCA-3′, antisense, 5′-TAGAAGGAGGCACCCGCTTG-3′; MAF, sense, 5′-TGGCAATGAGCAACTCCGAC-3′, antisense, 5′-CACTGGCTGATGATGCGGTC-3′; IFNG, sense, 5′-GAGTGTGGAGACCATCAAGGA-3′, antisense, 5′-TGTATTGCTTTGCGTTGGAC-3′; and β-actin, sense, 5′-CACGAAACTACCTTCAACTCC-3′, antisense, 5′-CATACTCCTGCTTGCTGATC-3′. The data were analyzed using the Applied Biosystems 7500 Manager software v2.3 (Thermo Fisher Scientific, Waltham, MA, USA).
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