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8 protocols using anti sting

1

Western Blotting Antibody Reagents

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Mouse control IgG (Santa Cruz Biotechnology, sc-2025) and rabbit control IgG (Millipore, 12–370), HRP-conjugated goat-anti mouse or rabbit IgG (Thermo Scientific, PA1-86717 and SA1-9510)(1:3,000), mouse anti-GFP (Sungene Biotech, KM8009)(1:1,000), mouse anti-FLAG (KM8002)(1:2,000), mouse anti-β-Actin (KM9001)(1:1,000), mouse anti-HA (COVANCE, MMS-101 R)(1:2,000), anti-pIκBα (9246L)(1:1,000), anti-Ubiquitin (sc-8017)(1:1,000), anti-IRF3 (sc-9082)(1:500), anti-IκBα (sc-371)(1:500), anti-p-IRF3 (4947 S)(1:1,000), anti-USP13 (abcam, GR56969-12)(1:500), anti-TBK1 (GR96328-11)(1:1,000) and anti-STING (13647 S)(1:1,000) were purchased from the indicated manufactures. Poly(I:C), ISD45, DNA90 and HSV120 were previously described36 (link)37 (link)38 (link)39 (link). ISD45: 5′-TACAGATCTACTAGTGATCTATGACTGATCTGTACATGATCTACA-3′; DNA90: 5′-TACAGATCTACTAGTGATCTATGACTGATCTGTACATGATCTACATACAGATCTACTAGTGATCTATGACTGATCTGTACATGATCTACA-3′; HSV120: 5′-AGACGGTATATTTTTGCGTTATCACTGTCCCGGATTGGACACGGTCTTGTGGGATAGGCATGCCCAGAAGGCATATTGGGTTAACCCCTTTTTATTTGTGGCGGGTTTTTTGGAGGACTT-3′.
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2

Western Blot Analysis of Immune Signaling

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Western blot was performed as described previously12 (link). Briefly, infected or uninfected mouse spleens were removed day 1 and day 4 p.i. and immediately frozen in liquid nitrogen. Total proteins were separated by 4–20% SDS-polyacrylamide gel electrophoresis (SDS/PAGE), transferred to a PVDF membrane (Roche Diagnostics), and probed with indicated primary antibodies and corresponding secondary antibody before chemiluminescent detection (SuperSignal West Pico Chemiluminescent Substrate; Pierce). Antibodies were purchased from Cell Signaling (Danvers, MA; anti-MyD88, Cat # 4283; anti-RIG-I Cat# 3743; anti-TLR4, Cat# 14358, anti-STING, Cat# 13647; anti-MDA5, Cat#5321), Abcam (Cambridge, United Kingdom; anti-p-STAT2, Cat# ab53132; anti-STAT2, Cat# ab231184; anti-p-STAT1, Cat# ab29045; anti-STAT1, Cat# ab3987; anti-TRIF, Cat# ab180689) and Sigma-Aldrich (St. Louis, MO; anti-β-actin, Cat# A2228).
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3

Protein Extraction and Western Blot Analysis

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Total proteins were extracted using cell lysis buffer (BioFeng, Changsha, Hunan, China). After the protein concentrations were determined by BCA kits, the protein samples were extracted and separated by 10% SDS-PAGE gel and then transferred to a PVDF membrane (Millipore, USA). The membrane was then blocked with 5% skimmed milk and incubated overnight, using the following main detection antibodies at 4°C: anti-GAPDH (1 : 1,000; Abcam), anti-Histon-H3 (1 : 1,000; Abcam), anti-Hsp60 (1 : 1,000; Abcam), anti-cGAS (1 : 1,000; Abcam), anti-STING (1 : 1,000; Abcam), anti-pSTING (1 : 1,000; Abcam), anti-TBK1 (1 : 1,000; Abcam), anti-pTBK1 (1 : 1,000; Abcam), anti-IRF3 (1 : 1,000; Abcam), anti-pIRF3 (1 : 1,000; Abcam), anti-PD-L1 (1 : 1,000; Abcam), anti-CD9 (1 : 1,000; Abcam), anti-TSG101 (1 : 1,000; Abcam), anti-Alix (1 : 1,000; Abcam), anti-Hsp90 (1 : 1,000; Abcam), or anti-β-actin (1 : 5,000; Proteintech). We washed 3 times with TBS-T, and the membranes were cultured with the secondary antibody at 24°C for 1 hr. The western blots were pictured using an ECL Reagent (Pierce, USA), and the density was verified using ImageJ software (NIH, USA).
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4

Western Blot Analysis of Immune Markers

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The proteins were extracted and separated by 10% SDS-PAGE. After being transferred onto polyvinylidene fluoride membranes, the membrane was transferred for 2 h at 4 °C and blocked with 5% non-fat milk-TBST, shaking on a room temperature shaker for 2 h. After blocking and washing the polyvinylidene fluoride membrane with washing solution, then the primary antibody was added. The primary antibodies used in this study were as follow: anti-Caspase-1 (1:1000; Abcam, Cambridge, MA, USA); anti-GSDMD (1:1000; Abcam); anti-NLRP3 (1:1000; Abcam); anti-CENPM (1:2000, Abcam) anti-E-cadherin (1:2000, Abcam); anti-N-cadherin (1:2000, Abcam); anti-vimentin (1:2000, Abcam); anti-cGAS (1:1000; Abcam); anti-p-STING (1:1000; Invitrogen); anti-STING (1:1000; Abcam); anti-β-actin (1:2000; Abcam). The membrane was incubated with shaking at 4 °C overnight. Then adding horseradish peroxidase-labeled goat anti-rabbit IgG (1:5000; Abcam), the membrane was incubated at room temperature with shaking for 1 h. Washing the membrane with TBST 3 times, we performed chemiluminescent detection, exposure, and development to analyze the data. The internal reference was β-actin.
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5

Immunofluorescence Staining of Spinal Cord

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Animals were deeply anesthetized with isoflurane and perfused through the ascending aorta with PBS (phosphate-buffered saline), followed by 4% paraformaldehyde with 0.1% picric acid in 0.16 M phosphate buffer. Spinal cord (30 μm, free-floating) was cut in a cryostat. The sections were first blocked with 1% BSA + 0.1% Triton X 100 for 1 h at room temperature, and then incubated overnight at 4 °C with the primary antibodies. The following primary antibodies were used: anti-STING (1:100, Abcam), anti-NeuN (1:200, Abcam), anti-GFAP (1:200, Cell Signaling Technology), and anti-IBA-1 (1:200, Abcam). After rinsing three times with PBS, the sections were incubated with fluorescence-labeled secondary antibody for 1 h. Images were collected using a fluorescence microscope (Olympus, Japan).
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6

Antibody Immunoblot Detection

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Antibodies were purchased from the indicated source: anti-cGAS (catalog number 15102; Cell Signaling Technology), anti-STING (catalog number abl81125; Abcam) (catalog number 13647; Cell Signaling Technology), anti-p-STING (catalog number 85735; Cell Signaling Technology), anti-p-TBK1 (catalog number 5483; Cell Signaling, Technology), anti-TBK1 (catalog 3504; Cell Signaling, Technology), anti-p-IRF3 (catalog number 4947; Cell Signaling Technology), anti-IRF3 (catalog number 4302; Cell Signaling Technology), and anti-β-actin (catalog number A5441; Sigma Aldrich). The anti-LANA antibody was obtained from Don Ganem (University California, San Francisco). Recombinant IFN-β was purchased from EMD Millipore (catalogue number: IF014).
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7

Western Blot Analysis of SAMHD1, STING

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Total proteins were washed with cold phosphate-buffered saline (PBS), extracted in modified radio immunoprecipitation assay (RIPA) buffer, and quantified by the bicinchoninic acid (BCA) method (Beyotime, Beijing, China). Then, 15 µL of proteins were loaded and resolved in 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) using the Tris-SDS buffer. Proteins were transferred onto polyvinylidene difluoride (PVDF) membranes (Merck Millipore, Burlington, MA, USA) using a wet transfer apparatus (BioRad, Hercules, CA, USA). The membranes were immunoblotted with the following antibodies: anti-SAMHD1 (Abcam, Cambridge, UK), anti-STING (Abcam), and anti-GAPDH antibodies (Abcam). The immunoreactive bands were detected using enhanced chemiluminescence (ECL) Plus reagent (Beyotime). The software ImageJ (https://imagej.nih.gov/ij) was used to quantify the data from three independent experiments.
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8

Spinal Cord STING Pathway Analysis

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Animals were sacrificed under deep isoflurane anesthesia. The dorsal horn of spinal cord segments was removed rapidly and snap-frozen in liquid nitrogen. Samples were mechanically homogenized in ice-cold radioimmune precipitation assay buffer containing phenylmethanesulfonyl fluoride (Abcam, Cambridge, UK). The protein content was determined using the bicinchoninic acid assay method. The loading and blotting of an equivalent number of total proteins were verified using a membrane with monoclonal mouse anti-β-actin antibody (1:5000; Sigma-Aldrich). The samples were resolved on a 10% SDS-PAGE gel, transferred to nitrocellulose membrane, and probed with polyclonal rabbit antibodies against anti-STING (1:1000, Abcam), TBK1 (1:1000, Cell Signalling Technology, Danvers, USA), p-TBK1 at Ser-172 (1:1000, Cell Signalling Technology), IRF3 (1:1000, Cell Signalling Technology), p-IRF3 at Ser-396 (1:1000, Cell Signalling Technology), p-ERK (1:1000, Cell Signalling Technology), followed by incubation with horseradish peroxidase-conjugated secondary antibodies (1:2000, Jackson Immuno Research). The membrane-bound secondary antibodies were visualized with enhanced chemiluminescence (Thermo Scientific, Rockford, IL, USA) and quantified with Image-Pro Plus software (Media Cybernetics Inc).
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