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Hdac activity assay kit

Manufactured by Merck Group
Sourced in United States

The HDAC Activity Assay Kit is a laboratory tool used to measure the enzymatic activity of histone deacetylases (HDACs). HDACs are a class of enzymes that play a role in the regulation of gene expression. The kit provides a standardized method for quantifying HDAC activity in cell or tissue samples.

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5 protocols using hdac activity assay kit

1

HDAC and HAT Activity Assays

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To measure the activity of both HDAC and HAT, the HDAC Activity Assay Kit (Millipore, item #17–356) and HAT Activity Assay Kit (BioVision, item #K334-100) were used according to the manufacturer's instructions. Proteins were extracted from fresh brain tissue and quantified. HDAC and HAT activity was estimated using 20 μg of protein. Briefly, for the HDAC activity assay, the HDAC assay buffer containing TSAs was used as an inhibitor control, HeLa nuclear extract was used as a positive control, and the HDAC assay buffer solution was used as the negative control. Subsequently, the enzyme plate was placed in an ELISA reader for the assay, with excitation light at 350–380 nm and emission light at 460 nm. The detected optical density value's magnitude reflected the HDAC activity level.
For the determination of the HAT activation, dissolve 20 μg brain tissue proteins in 40 μl of H2O (ultimate amount) and then with 5 μl of specific color substrates 1 and 2 based on a manufacturer's directions. 50 μl of 2 × HAT assay buffer and 8 μl of NADH-generating enzyme were added. After thorough mixing, the samples were incubated at 37 °C for 4 h. Subsequently, the samples were placed in an enzyme calibrator for detection at a reading wavelength of 440 nm. The magnitude of the value obtained reflected the level of HAT activity.
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2

HDAC Activity Assay Protocol

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HDAC activity was measured with an HDAC activity assay kit (Millipore, Billerica, MA). Nuclear extracts (15 μg) were incubated with the HDAC assay substrate at 37 °C for 45 min; then, diluted activator reagent was added, samples were incubated at 37 °C for another 20 min, and fluorescence was measured with a microplate recorder (excitation: 390 nm, emission: 460 nm). Procedures were conducted and standard curves were calculated as directed by the manufacturer's protocol.
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3

Assaying Histone Deacetylase Activity in HeLa Cells

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Histone deacetylase activity was assayed, as described [93 (link)]. HeLa cells were treated with TSA, PdNPs or in combination for 24 h. The cells were washed in PBS and suspended in 5 volumes of lysis buffer (R&D Systems, Inc., Minneapolis, MN, USA). Next, cells were harvested, and whole cell protein was extracted, using RIPA lysis buffer. Protein concentrations were measured, using BCA kit reagents. Supernatant samples, containing 20 µg of total protein, were used to assay HDAC activity. The samples and HDAC substrate, provided by the assay kit, were added to each well of a 96-well microtiter plate and incubated at 37 °C for 1 h. HDAC activity was measured using the HDAC Activity Assay kit (Sigma-Alrich, St. Louis, MO, USA). Experimental procedures were performed, according to the manufacturer’s instructions.
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4

Analysis of HDAC Activity in Breast Cancer Cells

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HDAC activity was analyzed according to a previously described method.29 (link) MDA-MB-231 human breast cancer cells were treated with TUB-A (4 μM) or PdNPs (4 μM) or a combination of TUB-A (4 μM) and PdNPs (4 μM) for 24 h. The cells were then washed with phosphate-buffered saline (PBS) and resuspended in five volumes of a lysis buffer (R&D Systems, Inc., Minneapolis, MN, USA). Next, the cells were harvested, and whole-cell protein was extracted using RIPA lysis buffer. Protein concentrations were determined with a bicinchoninic acid kit. Supernatant samples containing 20 μg of total protein were used for the determination of HDAC activity, which was measured using an HDAC Activity Assay Kit (Sigma-Aldrich) according to the manufacturer’s instructions. The samples were added to each well of a 96-well microtiter plate together with HDAC substrate provided in the assay kit and incubated at 37°C for 1 h.
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5

Histone Modification Analysis by Western Blot

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The analysis of the methylation or acetylation status of histones H3 and H4 N-terminal tails was performed by Western blotting, following the protocol described above. The post-translational modifications were assessed by using specific antibodies to detect histone methylation (H3K27me3 and H3K9me3) or histone acetylation (H3Ac e H4Ac). In addition, the activity of thyroid HAT and HDAC enzymes were evaluated by using a HAT Activity Colorimetric Assay Kit and a HDAC Activity Assay Kit, respectively, following protocol indicated by the manufacturer (Sigma Aldrich, St. Louis, MO, USA).
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