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P a l m laser microdissection system

Manufactured by Zeiss
Sourced in Germany

The P.A.L.M. laser microdissection system is a specialized instrument designed for the precise isolation of individual cells or specific regions of interest from microscopic samples. The system utilizes a laser-based technology to enable the selective extraction of these targeted elements from a prepared slide or sample for further analysis.

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6 protocols using p a l m laser microdissection system

1

Laser Capture Microdissection and RT-PCR of Myocardial RNA

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RNA from myocardial sections was captured by LCM using a Zeiss P.A.L.M. laser microdissection system as previously described by authors herein (Thorp 2011 (link)). Total RNA was isolated using the RNAqueous-Micro kit from Ambion and reverse-transcribed into cDNA using Superscript III First-Strand Synthesis Mix (Invitrogen). For semi-quantitative and Quantitative RT-PCR: Hearts were snap-frozen for RNA. Total RNA was extracted using the RNeasy kit (Qiagen). cDNA was synthesized from 4 μg of total RNA using oligo (dT) and Superscript II (Invitrogen). cDNA was subjected to quantitative RT-PCR amplification using a SYBR Green PCR Master Mix (Applied Biosystems).
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2

EGFP-labeled Neuron Transcriptome Analysis

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35 μm sections of labeled brains were stained for EGFP, and mounted on membrane PEN slides (Carl Zeiss). Labeled neurons were visualized, and captured into adhesive cap tubes (Carl Zeiss) using a PALM laser microdissection system (Carl Zeiss) using a uv laser to cut and flip tissue samples directly into inverted adhesive caps placed above slides. RNA was extracted using an RNeasy FFPE kit (QIAGEN). Reverse transcription was performed using random hexamers and Thermoscript reverse transcriptase (Fisher Scientific). Real time PCR was performed using SYBR® Green PCR Master Mix (Thermo Fisher) on a Realplex4 cycler (Eppendorf). We confirmed the specificity and size of the amplicons by running the PCR product on agarose gels, and by melting curve analysis. For Klhl14-overexpression experiments, data were analyzed using an unpaired two-sided t test. The PCR primers are listed in Key Resources Table.
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3

Laser Capture Microdissection of Myocardial RNA

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RNA from myocardial sections was captured by LCM using a Zeiss P.A.L.M. laser microdissection system as previously described (21 (link)). Total RNA was isolated using the RNAqueous-Micro kit from Ambion (Waltham, Massachusetts) and reverse-transcribed into cDNA using SuperScript III First-Strand Synthesis Mix (Invitrogen, Carlsbad, California).
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4

Laser Capture Microdissection of Myocardial RNA

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RNA from myocardial sections was captured by laser capture microdissection using a Zeiss P.A.L.M. laser microdissection system as previously described (21) (link). Total RNA was isolated using the RNAqueous-Micro kit from Ambion (Waltham, Massachusetts) and reverse-transcribed into cDNA using SuperScript III First-Strand Synthesis Mix (Invitrogen, Carlsbad, California).
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5

EGFP-labeled Neuron Transcriptome Analysis

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35 μm sections of labeled brains were stained for EGFP, and mounted on membrane PEN slides (Carl Zeiss). Labeled neurons were visualized, and captured into adhesive cap tubes (Carl Zeiss) using a PALM laser microdissection system (Carl Zeiss) using a uv laser to cut and flip tissue samples directly into inverted adhesive caps placed above slides. RNA was extracted using an RNeasy FFPE kit (QIAGEN). Reverse transcription was performed using random hexamers and Thermoscript reverse transcriptase (Fisher Scientific). Real time PCR was performed using SYBR® Green PCR Master Mix (Thermo Fisher) on a Realplex4 cycler (Eppendorf). We confirmed the specificity and size of the amplicons by running the PCR product on agarose gels, and by melting curve analysis. For Klhl14-overexpression experiments, data were analyzed using an unpaired two-sided t test. The PCR primers are listed in Key Resources Table.
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6

Cryosectioning and Laser Microdissection of Tumor Tissue

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Frozen tumor samples were embedded in OCT (NEG-50, Richard-Allan Scientific) and 10–15 μm sections were taken using MB DynaSharp microtome blades (ThermoFisher Scientific, USA) in a CryoStar cryostat microtome (ThermoFisher Scientific, USA). Tumor sections were then transferred to PEN membrane glass slides (Zeiss, Germany) and were immediately stained on ice (2 min in 70% ethanol, 2 min in 1% Cresyl violet (Sigma-Aldrich, USA) in 50% ethanol, followed by rinse in 100% ethanol. A PALM Laser Microdissection System (Zeiss, Germany) was used to catapult individual tumor islets into a 200 μl opaque AdhesiveCap (Zeiss, Germany).
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