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Tsa cy3 system

Manufactured by PerkinElmer

The TSA) Cy3 system is a laboratory instrument designed for the detection and quantification of proteins in biological samples. The system utilizes tyramide signal amplification (TSA) technology with Cy3 fluorescent dyes to enhance the sensitivity of protein detection. The core function of the TSA) Cy3 system is to facilitate the analysis of protein expression levels in a variety of experimental settings.

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8 protocols using tsa cy3 system

1

Comprehensive Histopathological and Immunofluorescence Analysis

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Histopathological examinations were performed after Mayer’s H&E staining. Immunofluorescence staining was performed on formalin-fixed paraffin-embedded tissue by using the Tyramide Signal Amplification (TSA) Cy3 system (Perkin&Elmer) according to the manufacturer’s protocol. The following primary antibodies were used: Anti-Villin (Santa Cruz), anti-β-Catenin (Cell Signaling), anti-Caspase-8 (Cell Signaling) and anti-Cleaved Caspase-8 (Cell Signaling). A biotinylated anti-rabbit secondary antibody from Dianova was used. Nuclei were counterstained with Hoechst 33342 (Invitrogen). For cell death analysis the In Situ Cell Death Detection Kit for TUNEL (TdT-mediated dUTP nick end labelling) from Roche was used. Bright-field and fluorescence pictures were taken by using the DMI4000 B microscope (Leica) in combination with a LEICA DFC360 FX or LEICA DFC420C camera.
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2

Immunohistochemical Quantification of NFAT5 in Mouse Femoral Arteries

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Mouse femoral arteries were fixed in 4% paraformaldehyde, dehydrated, and embedded in paraffin. Antigens were retrieved by incubating 5‐μm thick rehydrated tissue sections with citrate buffer (pH 6.0) at 100°C for 15 minutes. The sections were consecutively incubated with peroxidase blocking solution for 5 minutes and 0.25% casein and 0.1% BSA for 30 minutes. Thereafter, the sections were incubated with rabbit anti‐NFAT5 antibody 1:50 (Abcam) overnight at 4°C. For visualization, the Dako Envision™ (Dako) and TSA™‐Cy3 system (PerkinElmer) was used according to the manufacturers' instructions. Fluorescence intensity was recorded using an Olympus IX81 confocal microscope (Olympus). Quantitative image analyses were performed using the Olympus Xcellence software.
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3

Immunohistochemical Analysis of C. rodentium Infection

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For immunohistochemical (IHC) stainings, distal colonic tissues from mice infected with C. rodentium were fixed in buffered formalin (Roti-Histofix; Carl Roth) at 4 °C for 24 h, dehydrated, and embedded in liquid paraffin. 3-µm sections were cut using a microtome (Leica) and processed for IHC applying the Tyramide Signal Amplification (TSA) Cy3 system (Perkin Elmer) according to the manufacturer’s protocol. To analyze the expression level of IRF-1, a primary antibody from Cell Signaling (D5E4) was used (1:50 dilution). To visualize the colonization of the mucosal surface with C. rodentium, a primary antibody from Abcam (ab37056, 1:1000) was applied. Both primary antibodies were used in combination with a goat-anti-rabbit biotinylated secondary antibody (Jackson Immuno Research). Epithelial cells were stained with Alexa Fluor 488 anti-mouse CD326 (Ep-CAM; G8.8; BioLegend, 1:100). Nuclei were counterstained with DAPI (Invitrogen). Pictures were acquired on a Leica TCS SP5 II confocal microscope using Leica LAS AF version 2.7.3.9723 software.
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4

Histopathological and Immunofluorescence Analyses

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Histopathological examinations were performed after Mayer’s H&E staining. Immunofluorescence staining was performed on formalin-fixed paraffin-embedded tissue or cryosections by using the Tyramide Signal Amplification (TSA) Cy3 system (Perkin&Elmer), according to the manufacturer’s protocol. The following primary antibodies were used: Anti-F4/80 (eBioscience), anti-CD11c (BD-Pharmingen), anti-CD4 (BD-Pharmingen), anti-Lysozyme (Dako), anti-P65 and anti-Cleaved Caspase-3 (both Cell Signaling). The following biotinylated secondary antibodies were used: anti-rabbit and anti-hamster (both Dianova), anti-rat (BD Biosciences). In experiments with murine samples, nuclei were counterstained with Hoechst 33342 (Invitrogen), in human cells, nuclei were stained with DAPI (Life technologies). For cell death analysis the In Situ Cell Death Detection Kit (Fluorescein) for TUNEL (TdT-mediated dUTP nick end labeling) from Roche was used. Bright-field and fluorescence pictures were taken by using the DMI4000 B microscope (Leica) together with the LEICA DFC360 FX or LEICA DFC420C camera. For confocal images the confocal fluorescence microscope Leica TCS SP5 II was used.
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5

Multicolor Immunostaining of Frozen Tissue Sections

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Staining with TCRβ-bio (eBioscience, 30-F11) and EpCAM-APC (eBioscience, 48.8) was performed on 8-μm sections obtained from freshly frozen OCT compound (Tissue-Tek) embedded tissue. Sections were dried and fixed using methanol at −20 °C for 10 min followed by rehydration in PBS for 15 min. Consecutive blocking with the Avidin/Biotin blocking kit (Vector) and 5% goat serum in TBST was performed before immunostaining. For TCRβ detection, the TSA Cy3 system (Perkin Elmer) was used. Staining with MadCAM (BioLegend, MECA-367) and CD31FITC (BD, MEC13.3) was performed on 8-μm sections obtained from freshly frozen OCT compound (Tissue-Tek)-embedded tissue. Sections were fixed in acetone at −20 °C for 10 min followed by rehydration in TBST for 15 min. Slides were mounted in Vectashield (Vector) supplemented with DAPI and pictures were taken with an Apo-Tome equipped Axioplan-2 microscope connected to a digital camera (Zeiss). Haematoxylin and eosin staining of paraformaldehyde-fixed paraffin-embedded tissue sections was performed according to Mayer's protocol using reagents from Roth.
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6

Histopathological and Immunofluorescence Analysis

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Histopathological analyses were performed on formalin-fixed paraffin-embedded tissue after Mayer’s H&E staining. Immunofluorescence of tissue sections was performed using the TSA Cy3 system as recommended by the manufacturer (PerkinElmer). Anti–mouse RIP3 (ADI-905-242-100; Enzo Life Sciences), anti–mouse β-catenin (8480; Cell Signaling Technology), and anti–human β-catenin (4176; Cell Signaling Technology) antibodies were used for immunofluorescence staining. Nuclei were counterstained with Hoechst 3342 (Invitrogen). Cell death was determined by TUNEL (terminal deoxynucleotidyl transferase dUTP nick end labeling) analysis using the in situ cell death detection kit (Roche). Images were obtained using the microscope Leica DMI 4000B (Leica Microsystems).
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7

Multi-Dimensional Immune Profiling of Colonic Tissue

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H&E and immune histological staining of colonic sections with Abs directed against CD3 and Foxp3 were carried out as described previously 52 . Immunofluorescence of cryo-sections was performed using the TSA Cy3 system (PerkinElmer), a fluorescence microscope (IX70;
Olympus) and primary Abs against CD11c (HL3, BD Biosciences), MPO (15484, Abcam), and F4/80 (BM8, eBioscience). In brief, cryo-sections were fixed in ice-cold acetone for 10 minutes followed by sequential incubation with methanol, avidin/biotin (Vector Laboratories), and protein blocking reagent (Dako). Slides were then incubated overnight with primary Abs.
Subsequently, the slides were incubated for 30 minutes at room temperature (RT) with biotinylated secondary Abs (Dianova). All samples were finally treated with streptavidinhorseradish peroxidase and stained with tyramide (Cy3) according to the manufacturer's instructions (Perkin Elmer). Before examination, nuclei were counterstained with Hoechst 3342 (Invitrogen). Histological staining of splenic and thymic paraffin sections were carried out using Abs directed against CD3 (1:100, Serotec, MCA1477), B220
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8

Quantitative Phospho-S6 Ribosomal Protein Imaging

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System; PerkinElmer) for 1 hat RT. The cells were incubated with anti-digoxigenin-POD (1 : 200 in TNB, Roche) and rabbit anti-Phospho-S6 Ribosomal Protein antibody (1 : 400 in TNB, #4858S, Cell Signaling) in a humidified chamber overnight in 4°C, next they were washed with PBS-T, and incubated with Alexa 488-conjugated anti-rabbit IgG secondary antibody (1 : 1000; Invitrogen). The hybridization signal was amplified with TSA Cy3 System (Perkin Elmer). The imaging was performed using confocal microscope LSM 700, Axio Imager Z2 (Zeiss) in a stack of 0.4 μm thick Z section, using a 40× objective (oil immersion; 1.3 NA) with 1.2 zoom factor. The obtained stack was "flattened" into a single image using a maximum intensity projection. Quantification of fluorescence signal intensity was performed in ImageJ software. Signal intensity was averaged on the cell area.
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