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10 protocols using recombinant human bdnf

1

Investigating BDNF-TrkB Signaling Pathways

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Anti‐BDNF and anti‐TrkB antibodies were bought from Abclonal (Wuhan, China). Anti‐p‐Akt (Ser473), anti‐t‐Akt, anti‐p‐mTOR, anti‐mTOR, anti‐p‐Bad (Ser136), anti‐Bad, anti‐p‐ERK (Thr202/Tyr204), anti‐ERK, anti‐p‐p38 (Thr180/Tyr182), anti‐p38 and anti‐γH2AX (Ser139, 20E3) antibodies were provided by Cell Signaling Technology. Anti‐GAPDH antibody was obtained from Kangchen Biotech Co Ltd (Shanghai, China). Doxorubicin was provided by Aladdin Industrial Company (Shanghai, China, purity 98%). Recombinant human BDNF and TrkB‐Fc were purchased from R&D Systems (Minneapolis, MN, USA). Akt inhibitor (Akti) was provided by Sigma‐Aldrich (St. Louis, MO, USA).
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2

Recombinant Growth Factor Protocol

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Recombinant human BDNF, GDF, MFG-E8, TSP-1 and TSP-2 (R&D Systems, Inc. Minneapolis, MN). Recombinant human HGF (Life Technologies Carlsbad, CA).
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3

Investigating Signaling Pathways in Cellular Models

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Rabbit polyclonal antibodies specific for p-MEK and p-mTOR were purchased from Cell Signaling Technology (Danvers, MA, USA). Rabbit polyclonal antibodies specific for BDNF, MEK, p-ERK, ERK, mTOR, VEGF-C and β-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). LYEV-1 antibody was purchased from Abcam (Cambridge, MA, USA). Recombinant human BDNF was purchased from R&D Systems (Minneapolis, MN, USA). ON-TARGETplus siRNAs were purchased from Dharmacon Research (Lafayette, CO, USA). The miR-624-3p mimic, miRNA control, Lipofectamine 2000, and Trizol were purchased from Life Technologies (Carlsbad, CA, USA). DMEM, α-MEM, fetal bovine serum and all other cell culture reagents were purchased from Gibco-BRL life technologies (Grand Island, NY, USA). The BDNF-shRNA plasmids were purchased from RNAiCore (Taipei, Taiwan); their sequences are provided in Supplementary Table S1. The pSV-β-galactosidase control vector and luciferase assay kit were purchased from Promega (Madison, WI, USA). All other chemicals were purchased from Sigma-Aldrich (St. Louis, MO, USA).
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4

Stereotaxic Surgeries for VTA-NAc Pathway Manipulation

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Stereotaxic surgeries were performed as described previously39 (link). Mice were anesthetized with a mixture of ketamine (100 mg/kg/10 ml) and xylazine (10 mg/kg/10 ml) (Henry Schein) in sterile saline. HSVs (-Gadd45b miR or -GFP) or BDNF (0.25 µg/side, recombinant human BDNF, R&D Systems) were bilaterally infused into the NAc (AP = 1.5, ML = ±1.5, and DV = −4.4 mm; 10° angle), while an AAV2 vector expressing ChR2, fused with enhanced yellow fluorescent protein (AAV2-EYFP-ChR2, purchased from University of North Carolina Vector Core) or its control (AAV2-EYFP), was infused into the VTA (AP = −3.2, ML = ±1.0, and DV = −4.6 mm; 7° angle). An infusion volume of 0.5 µl was delivered using 5 μL Hamilton syringe (Hamilton Company) over the course of 5 min (at a rate of 0.1 μl/min). Mice were allowed to recover for 4 days following the HSV infusion or for 7 days following the BDNF infusion before going through behavioral assessment. For the optogenetic stimulation of the VTA-NAc pathway, optic fibers were bilaterally implanted into the NAc (AP = 1.5; ML = ±1.3; DV = −3.9; 0° angle), three weeks after AAV2-EYFP-ChR2 or AAV2-EYFP infusion into VTA. Mice were allowed to recover for seven days following the cannulation, and then stimulated in home cages.
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5

Isolation and Culture of Motor Neurons

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ES cell-derived motor neurons were cultured as previously described17 (link). Primary motor neurons were isolated from spinal cords of E12.5–13.5 mouse embryos54 (link). Briefly, embryos were sacrificed, the spinal cords dissected and the ventral horns isolated and dissociated by incubation with trypsin, followed by incubation with DNase and centrifugation through a BSA cushion. The resulting cell pellet was resuspended in complete motor neuron medium [Neurobasal (ThermoFisher, Waltam, MA), 2% v/v B27 supplement (ThermoFisher), 2% heat inactivated horse serum, 1% GlutaMAX (ThermoFisher), 25 μM β-mercaptoethanol, 10 mg/ml recombinant rat CNTF (R&D Systems, Minneapolis, MN), 100 pg/ml recombinant rat GDNF (R&D Systems), 1 ng/ml recombinant human BDNF (R&D Systems) and Pen/Strep antibiotics]. Cells were immediately plated on poly-DL-ornithine/laminin coated plates and maintained in culture for 5–8 d (5–8 DIV).
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6

Neuronal Cell Culture Immunostaining and Blotting

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All drugs and reagents were from Sigma unless otherwise indicated. The main reagents were as follows: Neurobasal medium (Gibco), B27 Supplement (Gibco), Sulfo-NHS-LC-Biotin (Thermo Scientific), NeutrAvidin Agarose Resins (Thermo Scientific), recombinant human BDNF (R&D System), and K252a (Tocris).
The antibodies used for western blotting were ASIC1a (1:500, sc-13905, Santa Cruz) and GAPDH (1:2000, KC-5G4, KangChen). The HRP-conjugated secondary antibodies used for western blotting were goat anti-rabbit IgG (1:2000, AP132P, Millipore), rabbit anti-mouse IgG (1:2000, AP160P, Millipore), and rabbit anti-goat IgG (1:2000, AP106P, Millipore). The primary antibodies used for immunostaining were GFP (1:1000, A10262, Invitrogen), HA (1:1000, 901501, BioLegend), DsRed (1:1000, 632496, Clontech), and PSD-95 (1:1000, ab13552, Abcam). The secondary antibodies used for immunostaining were donkey anti-human IgG DyLight 550 (1:1000, SA5-10127, ThermoFisher), donkey anti-human IgG DyLight 488 (1:1000, SA5-10126, ThermoFisher), donkey anti-mouse IgG Alexa 647 (1:1000, 715-605-150, Jackson ImmunoResearch), donkey anti-rabbit IgG Alexa 568 (1:1000, A10042, Invitrogen), and goat anti-chicken IgG Alexa 488 (1:1000, A11039, Invitrogen).
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7

BDNF and NPY Receptor Antagonists

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Recombinant human BDNF was purchased from R&D Systems (Minneapolis, MN); NPY from Bachem (San Carlos, CA); Y5R antagonist, CGP71683, and Y2R antagonist, BIIE0246, from Tocris (Ellisville, MO); Trk inhibitor, K252a and chemotherapeutics from Sigma (St. Louis, MO).
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8

BDNF and NPY Receptor Antagonists

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Recombinant human BDNF was purchased from R&D Systems (Minneapolis, MN); NPY from Bachem (San Carlos, CA); Y5R antagonist, CGP71683, and Y2R antagonist, BIIE0246, from Tocris (Ellisville, MO); Trk inhibitor, K252a and chemotherapeutics from Sigma (St. Louis, MO).
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9

Investigating Schwann Cell Signaling Pathways

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Four cell lines were all purchased from American Type Culture Collection (ATCC, Manassas, VA, USA), including human neuroblastoma BE(2 (link))-C and SH-SY5Y, rat Schwann cell (RSC) RT4-D6P2T, and human Schwann cell (HSC) from ScienCell Research Lab (San Diego, CA, USA). Following the manual, the cell culture medium and related reagents were used, and all were purchased from the cell culture facility at University of California, San Francisco. Recombinant human BDNF was purchased from R&D systems Inc. (Minneapolis, MN, USA) and used for the treatment. S100, p75 antibodies (Chemicon, Inc., Temecula, CA, USA) and secondary antibody FITC-conjugated goat anti-mouse IgG (Chemicon, Inc., Temecula, CA, USA) were used for immunofluorescence staining. Beta-actin, JAK2, phospho-JAK2 (Chemicon, Inc., Temecula, CA, USA), STAT1, phospho-STAT1, STAT3, and phospho-STAT3 (BD Biosciences, CA, USA) antibodies were used for immunoblot. The reagents in ECL kit (Amersham Life Sciences Inc., Arlington Heights, IL, USA) were used as substrate for all the immunoblotting. OSM-M and IL-6 enzyme linked immunosorbent assay (ELISA) kit (R&D systems Inc., Minneapolis, MN, USA) were applied to assay the secretion of cytokine from Schwann cells.
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10

Optimized Culture Medium for Neurons

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Culture medium was composed of Neurobasal-A (Thermo Fisher, cat. # 10888022), 2% B-27 supplement (Thermo Fisher, cat. # 17504044), 1% N2 supplement (Thermo Fisher, cat. # 17502048), 0.1% gentamicin (Millipore Sigma, cat. # G1397), 200 mM L-glutamine (Thermo Fisher, cat. # 25030081). With or without the addition of 50 ng/mL recombinant human BDNF (R&D Systems, Minneapolis, MN, USA, cat. # 248-BDB) and 5 μM Forskolin (Stemcell Technologies, Cambridge, MA, USA, cat. # 72114).
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