The largest database of trusted experimental protocols

4 protocols using pcdk9

1

Comprehensive Protein Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies and sources: CDK9, pCDK9, RNAPII, phospho-RNAPII, TGM2, Cyclin B1, Cyclin E1, and NUP98 (Cell Signaling Technology); CDC37, SPT5, Stomatin, PLK1, Cyclin A1 (Santa Cruz Biotechnology); BRD4, Cyclin T1 and GFP (Abcam); Caspase-8 (Enzo Life Sciences); β-Actin, pCDK9, Vimentin, and Flag (Sigma-Aldrich).
Reagents and sources: CellTiter-Blue Cell Viability assay and Caspase-Glo 3/7 assay (Promega); BrdU kit (Roche); Thymidine, 5-ethynyl uridine (EU), Azide-fluor 488 (Sigma-Aldrich); AnnexinV and 7AAD (BD); [γ-32P] ATP (3000Ci/mmol, Amersham Pharmacia); Trail, FasL (Enzo Life Sciences); PLA assay kit (Olink Biosciences); BAY1251152, Cisplatin, and Carboplatin (Selleckchem); BioCoat Matrigel invasion chamber (Corning); Migration chamber (Ibidi); RNeasy Plus kit (Qiagen), active GST-CDK9/Cyclin K (SRP5012, Sigma-Aldrich).
The following vectors were used: pCas9(BB)-2A-Puro (PX459) V2.0 (62988, Addgene); p3xFlag-CMV-7.1 (E7533, Sigma); pGEX-5X-3 (28–9545-55, GE Healthcare) and pEGFP-C2 (6083-1, Clontech). All siRNAs and primers were from Sigma-Aldrich.
+ Open protocol
+ Expand
2

Multiparameter Immune Cell Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antisera used are: CD25 (catalog no. 12-0259-42, eBioscience), CD69 (catalog no. 11-0699-41, eBioscience), PARP (Catalog no. 95425, Cell Signaling), Cyclin T1 (catalog no. sc-10750, Santa Cruz Biotechnology), β-actin (catalog no. sa135600204; Sigma), phosphoNF-κB p65, (Ser536, catalog no. 3033S, Cell Signaling), pCDK9 (Thre186, catalog no. 2549, Cell Signaling), Hsp90 (catalog. no. sc-69703, Santa Cruz Biotechnology), NF-κB p65 (catalog. no. sc-109, Santa Cruz, Biotechnology), CDK9 (catalog no. sc-484, Santa Cruz Biotechnology).
+ Open protocol
+ Expand
3

METTL3 Interacts with HDAC1/2 in HEK293T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK293T cells were seeded in 6-well plates 16 h before transfection. The indicated expression vectors (Myc-CDK9, HA-HDAC1, or HA-HDAC2: 1 μg) were co-transfected with or without the Flag-METTL3 expression vector (1 μg) in HEK293T cells. For the Co-IP of HDAC1/2 and METTL3, total cell lysates were first incubated with DNase1 (200 U/ml) at 37 °C for 30 min to digest genomic DNA. These lysates were then immunoprecipitated with Myc, Flag, or HA beads at 4 °C for 2 h. Immunoblotting was performed using the indicated antibodies. Antibody dilutions were as follows: METTL3 (96391, Cell Signaling Technology), 1:2500; Lamin B1 (12987-1-AP, Proteintech), 1:5000; Tubulin (sc-5286, Santa Cruz), 1:5000; β-actin (60008-1-Ig, Proteintech), 1:5000; CDK9 (11705-1-AP, Proteintech), 1:2500; p-CDK9 (2549, Cell Signaling Technology), 1:2500; CD36 (18836-1-AP, Proteintech), 1:5000; Flag (F1804, Sigma), 1:5000; Myc (16286-1-AP, Proteintech), 1:5000; HDAC1 (5356, Cell Signaling Technology), 1:2500; HDAC2 (5113, Cell Signaling Technology), 1:2500; and Caspase3 (9662, Cell Signaling Technology), 1:2500. Other reagents were listed in Supplementary Table 3.
+ Open protocol
+ Expand
4

Characterization of MCL-1 and SRSF Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
MiaR cells were grown in 2D, 10 cm dishes and treated with 300 nM UNC-721A dissolved in DMSO for times ranging from 1 to 4 h. The samples were harvested using MIB-MS lysis buffer (above), and determination of protein levels was performed by Bradford analysis as described above. The proteins amounts were normalized and the samples were mixed with 4× sample buffer and 20 μg of each sample applied to sodium dodecyl sulfate (SDS)–polyacrylamide gel electrophoresis. The proteins were transferred to polyvinylidene difluoride (PVDF) and the membrane blocked with 5% bovine albumin in Tris-buffered saline with 0.05% Tween-20 (TBST) for 1 h at room temperature. Primary antibodies for MCL-1 (Santa Cruz, Santa Cruz, CA), pSRSF (EMD Millipore, Darmstadt, Germany), tSRSF1 (Thermo Fisher, Waltham, MA), tSRSF6 (Invitrogen, Waltham, MA), PARP (Cell Signaling, Danvers, MA), CDK9 (Santa Cruz), pCDK9 (Cell Signaling), RNA polymerase II (phospho Ser2, Abcam, Cambridge, UK), and β-Actin (Santa Cruz) were diluted in 5% bovine serum albumin (BSA)/TBST, and the membranes were incubated overnight at 4 °C. The membranes were washed three times with TBST, followed by incubation in horseradish peroxidase (HRP)-conjugated secondary antibodies (Promega) in 5% nonfat dry milk in TBST. The blots were imaged using the ChemiDoc Touch Imaging System and ECL reagent (Bio-Rad).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!