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3 protocols using cul4a

1

Epigenetic Changes in Huntington's Disease

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Protein lysates of NPC cell pellets (Control, 45Q, and 81Q) were prepared using RIPA lysis buffer (RIPA Buffer, 1 mM PMSF, 5 μm Z-VAD, 1 mM NaVan, and 1 × Complete Protease Inhibitor Mixture tablets). Protein lysates were sonicated for 2 cycles of 30 s on, 30 s off. 35 μg of protein lysates were separated on 10% TGX FastCast gel (Biorad) and transferred on nitrocellulose membranes (Biorad). The following primary antibodies were used: CUL4A (1:1000; Proteintech Cat# 14851-1-AP, RRID:AB_2261175), H3 (1:2500, Abcam Cat# ab1791, RRID:AB_302613), H3K27me3 (1:500, Millipore Cat# 07-449, RRID:AB_310624), H3K9me1 (1:500; Thermo Fisher Scientific Cat# MA5-33385, RRID:AB_2815523), H3K9me2 (1:500; Thermo Fisher Scientific Cat# 720092, RRID:AB_2532802), and β-actin (1:5000; Sigma-Aldrich Cat# A5441, RRID:AB_476744) (Supplemental Table S1). Antibody validation proved by venders. Membranes were incubated with primary antibodies at 4 °C overnight. The following secondary antibodies (1:5000) were used: IRDye® 680RD Goat anti-Rabbit IgG and IRDye® 800RD Goat anti-Mouse IgG (LI-COR). The membrane was imaged using the LI-COR Imaging System and Odyssey V3.0 software (LI-COR), followed by intensity analysis with GelAnalyzer. Statistical significance was tested using a two tailed t-test with a P-value threshold of 0.05.
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2

Antibody Sources for Cell Signaling

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Antibodies against PHB2 (Cat#14085S), PHB1 (Cat#2426S), SHIP2 (Cat#2839S), Akt (Cat#9272S), pAkt-Ser473 (Cat#4060S), pAkt-Thr308 (Cat#13038S), p21 (Cat#2947S), p27 (Cat#3686S), Histone H3 (Cat#9715S), K63 (Cat#5621S), K48 (Cat#8081S), and Ki67 (Cat#34330SF) were purchased from Cell Signaling Technology (Beverly, MA, USA), antibodies against tGFP (Cat#TA150041) was purchased from OriGene (Rockville, MD, USA), antibodies against Flag (Cat#66008-3-Ig, Cat#20543-1-AP), HA (Cat#51064-2-AP, Cat#66006-2-Ig), His (Cat#66005-1-Ig), GST (Cat#66001-2-Ig), Ubiquitin (Cat#10201-2-AP), β-actin (Cat#66009-1-Ig), NEDD4 (Cat#21698-1-AP), SIAH2 (Cat#12651-1-AP), WWP2 (Cat#67274-1-Ig), Cul4A (Cat#14851-1-AP) and MUL1 (Cat#16133-1-AP) were purchased from Proteintech (Wuhan, China). MG132 (Cat#S1748) was purchased from Beyotime Biotechnology (Shanghai, China). Cycloheximide (CHX) solution was purchased from Sigma-Aldrich (St. Louis, MO, USA).
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3

Antibody Panel for AMPK Signaling

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Primary antibodies against the following proteins were obtained from Cell Signaling Technology: p-AMPK (#2535, 1:1000), p-AMPK substrate motif (#5759, 1:1000), AMPKa (#2532, 1:2000), AMPKa2 (#2757, 1:2000), p-mTOR (#5536, 1:1000), mTOR (#2983, 1:2000), p-4EBP1 (#2855, 1:1000), p-S6K (#9205, 1:1000) and S6K (#9202, 1:2000); From Upstate: PROX1 (07-537, 1:2000); from Abcam: AMPKa1 (ab32047, 1:2000) and DDB1 (ab109027, 1:2000); from Sigma: Flag M2 (F3165, 1:5000) and β-Actin (A1978, 1:10000); from Thermo Fisher Scientific: HA (SG77) (71-5500, 1:3000); from Abclonal: p-S79 (customization, 1:1000), ACADM (A4567, 1:2000) and EHHADH (A13488, 1:2000); from Proteintech: CUL4A (14851-1-AP, 1:2000), CUL4B (12916-1-AP, 1:2000), BCKDHB (13685-1-AP, 1:2000) and ACADSB (13122-1-AP, 1:2000); from Cell Signaling Technology: anti-rabbit IgG, HRP-linked Antibody (#7074, 1:5000) and anti-mouse IgG, HRP-linked Antibody (#7076, 1:5000).
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