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24 protocols using protein lysis buffer

1

Western Blot Protein Analysis

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Cells were washed with ice-cold PBS and extracted in a protein lysis buffer (Intron Biotechnology, Seoul, Korea). Protein concentrations were determined by the Bradford assay. The cell lysates were mixed with 5 Χ SDS sample buffer, boiled for 4 min, and then separated on 10% SDS-PAGE. After electrophoresis, proteins were transferred to polyvinylidene difluoride membranes. The membranes were blocked in 2% bovine serum albumin (BSA) for 30 min, washed, and incubated overnight at 4 °C with specific primary antibodies in Tris-buffered saline 2% BSA and 0.1% Tween-20 (TBS-T). The membranes were washed three times to remove the primary antibodies and incubated for 2 h with a horseradish peroxidase-conjugated secondary antibody (1:1000–2000). After washing three times with TBS-T, immuno-positive bands were visualized using the ECL chemiluminescent system (Amersham Pharmacia Biotech, ON, Canada) and analyzed using ImageQuant Las-4000 (GE Healthcare Life Science, WI, USA).
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2

Protein Expression Analysis by Western Blot

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Cells were washed with ice-cold PBS and extracted in protein lysis buffer (Intron Biotechnology, Seoul, Korea). The total protein content of the samples was determined according to the Bradford assay (Bio-Rad Laboratories, Hercules, CA, USA) using a bovine serum albumin (BSA) standard curve. Protein samples of cell lysate were mixed within equal volume of SDS sample buffer, boiled for 5 min and were loaded on 10–12% SDS-PAGE gels. After acrylamide gel-electrophoresis, proteins were transferred to polyvinylidene difluoride (PVDF) membranes. The membranes were blocked in 5% non-fat dry milk for 30 min, washed and were incubated for overnight at 4 °C with specific primary antibodies against cyclin E, total Akt, phospho-Akt, and β-actin in Tris-buffered saline (TBS) containing Tween-20 (0.1%). Primary antibodies were removed by washing the membranes three times in TBS-T and the membranes were incubated for 2 h with horseradish peroxidase-conjugated secondary antibody (1:1000–2000). Following the washing procedures in TBS-T, immune-positive bands were visualized by enhanced chemiluminescene and exposed to ImageQuant LAS-4000 (Fujifilm Life Science, Tokyo, Japan). The relative intensities of protein bands were determined by NIH Image 1.59 software (Image J) (NIH, Bethesda, MD, USA) and then all values were subsequently normalized to untreated group.
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3

Adipogenic Differentiation Assay

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D3G (chemical formula C21H21O12Cl, >97% purity) was purchased from Polyphenols AS (Sandnes, Norway). Dorsomorphin, AICAR, indomethacin, 3-isobutyl-1-methylxanthine (IBMX), and dexamethasone (DEX) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco’s modified Eagle’s medium (DMEM), bovine calf serum (BCS), trypsin-EDTA, and fetal bovine serum (FBS) were procured from Thermo Fisher (San Jose, CA, USA). CCK-8 was purchased from Dojindo Molecular Technologies (Rockville, MD, USA). Insulin was purchased from Thermo Fisher (San Jose, CA, USA). Random hexamers and the reverse transcriptase enzyme mix (GoScriptTM) were obtained from Promega (Madison, WI, USA). Monoclonal antibodies against C/EBPα, SREBP1, PPARγ, FAS, ACC, SIRT1, p-ACC, AMPK, p-AMPK, CPT-1, and horseradish peroxidase (HRP)-coupled anti-rabbit or anti-mouse secondary antibodies were purchased from Abcam (Cambridge, UK). Total RNA was extracted using an easy-spinTM Total RNA Extraction Kit (iNtRON Biotechnology, Seongnam-si, Korea) and a PRO-MEASURETM protein measurement solution, protein lysis buffer, and a Western blot detection system were purchased from iNtRON Biotechnology (Seongnam-si, Korea). The polyvinylidene difluoride (PVDF) membrane was procured from Merck (Burlington, Massachusetts, USA).
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4

Microglia Protein Extraction and Analysis

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BV2 microglia cells were pretreated with PS for 2 h and then stimulated with LPS/ATP. Total protein was prepared using Protein Lysis Buffer (iNtRON Biotechnology) at the indicated time points. Lysates were centrifuged at 14,000 g at 4°C for 20 min, and supernatants were collected. In a parallel experiment, the cells were pretreated with PS for 2 h and then incubated with LPS/ATP for 1 h. Nuclear protein was extracted using NE-PER Nuclear and Cytoplasmic Extraction Reagents (Pierce, Rockford, IL, USA). Protein concentrations were measured using a Bio-Rad Protein Assay Kit (Bio-Rad, Hercules, CA, USA), and western blotting was performed. The images were captured by ImageQuant LAS 500 (GE Healthcare Bio-Sciences AB, Uppsala, Sweden). The expressional values of each protein were normalized to β-actin or nucleolin.
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5

Protein Extraction and Western Blot Analysis

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Protein was extracted from tissue samples isolated in mice by homogenizing with protein
lysis buffer (Intron Biotechnology, Seoul, South Korea). Protein concentration was quantified by Bradford assay, and protein denaturation was performed at 95°C for 5 minutes after mixing the sample buffer. The protein was separated using SDS-PAGE, and the separated proteins were transferred to the polyvinylidene difluoride membrane. The membrane was blotted for 30 min with 5% skim milk in Tris-buffered saline (TBS, Boster Biological Technology Ltd., Wuhan, China). The blocked membrane was incubated overnight at 4°C with the primary antibody diluted 1:1000 in TBS-T. The membrane was incubated for 2 h at room temperature with the dilution of the appropriate horseradish peroxidase-linked secondary antibody. After that, enhanced chemiluminescence (ECL) kit (EMD Millipore, Billerica, MA, USA) was used for visualization of immunoreactive bands and detected by Image Quant Las-4000 (GE Healthcare Life Science, WI, USA). NPY and β-actin antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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6

Protein Extraction and Western Blot Analysis

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Protein lysis buffer (Intron Biotechnology, Seoul, South Korea) was used for the protein extraction from A2780 cells. Protein concentrations were measured by the Bradford assay. The protein samples were mixed with SDS-PAGE sample buffer and heated for 5 min at 95 °C. The samples were loaded on a gel for SDS-PAGE. Following electrophoretic separation, separated proteins were blotted to PVDF (polyvinylidene difluoride) membranes. After blocking with 2% bovine serum albumin (BSA) for 30 min, the membranes were incubated overnight at 4 °C with diluted primary antibodies against caspase-3, -8, 9, and β-actin in TBS-T (Tris-buffered saline containing Tween-20) with 2% BSA. After a subsequent washing with TBS-T, the membranes were incubated with an appropriate secondary antibody at room temperature for 2 h. Immunoreactive bands were visualized by the ECL kit and analyzed by ImageQuant Las-4000 (GE Healthcare Life Science, WI, USA). Caspase-3 and β-actin antibodies were acquired from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Caspase-8 antibody was obtained from BD Biosciences. Caspase-9 antibody was purchased from Cell Signaling (Beverly, MA, USA).
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7

Asarinin Induces Apoptosis in Cells

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The cells were treated with (−)-asarinin (1) and incubated for 48 h. The cells were rinsed twice with ice-cold PBS and lysed with protein lysis buffer (Intron Biotechnology, Seoul, Korea) containing protease inhibitors (0.5 mM PMSF and 5 μg/mL aprotinin). The lysates were mixed with 5X sodium dodecyl sulfate (SDS) sample buffer and boiled for 5 min for denaturation. Total protein was run on 10–12% SDS-PAGE gels and electrotransferred onto a polyvinylidene difluoride (PVDF) membrane. The membrane was immunoblotted using specific primary antibodies overnight at 4 °C following blocking with 5% non-fat dry milk for 30 min–1 h. After washing, the membrane was incubated with horseradish peroxidase-conjugated secondary antibody (1:1000–2000) at room temperature for 1−2 h. After washing, immunepositive bands were visualized using an ECL chemiluminescent system and analyzed by Image Quant LAS-4000 (Fujifilm Life science, Tokyo, Japan). Anti-caspase-3 and b-actin antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Caspase-9 antibody was purchased from Cell Signaling (Beverly, MA, USA). Caspase-8 antibody was obtained from BD Biosciences (San Jose, CA, USA).
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8

Western Blot Analysis of Protein Expression

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Cells were lysed in protein lysis buffer (Intron Biotechnology, Seongnam, Korea) and centrifuged at 13,000 rpm for 10 min. Protein concentrations in the supernatant were determined using a bicinchoninic acid protein assay kit. Next, 20 μg of proteins were separated per lane by SDS–polyacrylamide gel electrophoresis and blotted onto nitrocellulose membranes. Blots were incubated with the appropriate primary antibodies at a dilution of 1:1000, and further incubated with horseradish-peroxidase-conjugated secondary antibody. Bound antibodies were detected using an enhanced chemiluminescence kit (Pierce Biotechnology, Rockford, IL, USA). Image analysis was used to determine the relative band densities, using Image J software (https://imagej.nih.gov/ij/, accessed on 7 February 2022).
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9

Western Blot Analysis of Protein Targets

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The cells were washed with ice-cold phosphate-buffered saline (PBS) and extracted by protein lysis buffer (Intron Biotechnology, Seoul, South Korea). The protein concentration was determined by the Bradford assay. The cell lysates were mixed with 5× sodium dodecyl sulfate (SDS) sample buffer, boiled for 5 min, and then separated on 10% SDS-PAGE. After electrophoresis, the proteins were transferred to polyvinylidene difluoride (PVDF) membranes. The membrane was blocked in 5% nonfat dry milk for 30 min, rinsed and incubated with specific antibodies against p53 (mouse monoclonal, 1:2500), Rad21 (mouse monoclonal, 1:500), S1PR1 (mouse monoclonal, 1:1000), THBS1 (mouse monoclonal, 1:000), and β-actin (mouse monoclonal, 1:5000) in Tris-buffered saline containing 5% nonfat dry milk and Tween-20 (0.1%) overnight at 4 °C (TBS-T). The membranes were washed three times to remove the primary antibodies and incubated for 2 h with a horseradish peroxidase-conjugated secondary antibody (1:1000–2500). After washing three times with TBS-T, immunopositive bands were visualized by enhanced chemiluminescence (ECL; Abclon, Seoul, South Korea) and analyzed using ImageQuant Las-4000 (GE Healthcare Life Science, Milwaukee, WI, USA).
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10

Investigating HBE-Mediated Triglyceride Regulation

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To examine the molecular mechanisms of HBE on triglyceride accumulation in liver, lipogenesis markers and AMPK and ACC phosphorylation were investigated by Western blot analysis. The liver tissue sample was extracted by protein lysis buffer (iNtRON Biotechnology, Seongnam-si, Korea) and subjected to western blot analysis using the same procedure as described in the HepG2 cells.
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