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Orca 2 camera

Manufactured by Hamamatsu Photonics
Sourced in Japan

The Orca II camera is a high-performance scientific imaging device designed for a variety of applications. It features a large, high-resolution sensor and advanced optics to capture detailed images and data. The Orca II camera is a versatile tool for researchers and scientists who require precise and reliable imaging capabilities.

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16 protocols using orca 2 camera

1

Quantitative Imaging of RNA Loci

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Images were captured by Olympus IX81 motorized inverted microscope equipped with a Hamamatsu Orca2 camera. Images were obtained with 0.2 μm spacing with the 100× oil objective and projected onto a single plane or 3D image. At least 30 Z-sections at 0.2 μm intervals were taken to cover the entire thickness of the cell. The exposure times ranged from 0.2 s (nuclear loci) to 4 s (cytoplasmic mRNA). The exposure time increases not only sensitivity approximately proportionately but also the background. Comparisons are made at the same exposure times. The target size is much smaller than the image due to the dispersion of the fluorescent light from the target. Loci have multiple clustered RNA molecules either p-RNA or sp-RNA. These terms have been used rather than pre-mRNA and mRNA to emphasize the absence of information on RNA processing. We term this fluorescent cluster the RNA locus, which elsewhere has been shown to overlap with the gene (DNA) locus. p-RNA and sp-RNA at the RNA are separate in the images. Captured images were deconvoluted with Slidebook 5.0 software (Intelligent Imaging Innovations, Inc.) for further analysis.
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2

Quantitative Imaging of Cellular RNA Loci

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Images were captured by Olympus IX81 motorized inverted microscope equipped with a Hamamatsu Orca2 camera. Images were obtained with 0.2 μm spacing with the 100× oil objective and projected onto a single plane or 3D image. At least 30 z-sections at 0.2 μm intervals were taken to cover the entire thickness of the cell. The exposure times ranged from 0.2 s (nuclear loci) to 4 s (cytoplasmic mRNA). The exposure time increases sensitivity approximately proportionately but also increases background. Comparisons are made at the same exposure times. The target size is much smaller than the image due to the dispersion of the fluorescent light from the target. For loci have multiple clustered RNA molecules either p-RNA or sp-RNA. These terms have been used rather than pre-mRNA and mRNA to emphasize the absence of information on RNA processing. We term this fluorescent cluster the RNA locus which elsewhere we have shown to overlap with the gene (DNA) locus. p-RNA and sp-RNA at the RNA are separate in the images. Captured images were deconvoluted with Slidebook 5.0 software (Intelligent Imaging Innovations, Inc.) for further analysis.
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3

Blood Smear Analysis of Frog Species

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A small drop of blood was collected from the frog foot of each species with a sterile needle, and the drop was smeared on a slide. The smear was then fixed with methanol and stained with Giemsa stain (Sigma). Cells were imaged in brightfield using Micromanager software54 with an upright Olympus BX51 microscope equipped with a Olympus UPlan 40x air objective and ORCA-II camera (Hamamatsu Photonics). Cross-sectional areas of cells and nuclei were measured in Fiji53 (link) using the freehand tool. X. paratropicalis blood smears were a kind gift from Ben Evans (McMaster University).
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4

Imaging Frog Skin Cell Morphology

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Shed frog skin was collected from frog housing tanks and mounted carefully on a microscope slide by rolling the skin flat so that a monolayer of cells could be imaged. Cells were imaged immediately after collection, unstained and without a coverslip, in brightfield using Olympus cellSens Dimension 2 software on an upright Olympus BX51 microscope equipped with an ORCA-II camera (Hamamatsu Photonics) and an Olympus UPlan 20x air objective. Cross sectional areas of cells and nuclei were measured in Fiji using the freehand tool.
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5

Imaging Dynamics of CDR Formation

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Dynamics of CDR formation was imaged by differential interference contrast (DIC) on an Olympus VivaView FL microscope using a UPLSAPO 20×, numerical aperture 0.75, DIC objective and a Hamamatsu ORCA II camera. Cells were stabilized for 30 min in the incubator before the addition of PDGF. Images were acquired every 35 s. Six different samples (three CTRL and three RhoG KD) were analyzed in parallel for every experiment, and five fields were imaged simultaneously for each of the samples. CDR properties were measured in every frame for each ruffle using ImageJ as described.
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6

High-Resolution Microscopy Imaging Protocol

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Most of the images were acquired using an Olympus IX83 microscope (UPLSAPO O objective 100×, NA 1.4 or UPLFLN 2PH 10×, NA 0.3 or LUCPLFLN PH 20×, NA 0.45) equipped with a Zyla camera (Andor) with a resolution of 2048 × 2048 or 1024 × 1024 pixels using acquisition software (CellSense Dimension, Olympus, Tokyo, Japan). Some of the images were acquired using an Olympus IX81 microscope (UPLSAPO O objective 100×, NA 1.4 or UPLFL PH objective 40×, NA 0.75) equipped with a Hamamatsu ORCA II camera with a resolution of 1344 × 1024 pixels using Cell∧R acquisition software (Olympus, Tokyo, Japan). In some cases, the images were acquired in the Z stack mode and the final images are presented as a projection of the maximal intensity of the Z stack [17 (link),25 (link)].
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7

Immunofluorescence Microscopy of Chromosome Spreads

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Chromosome spreads were performed as previously described (Wahba et al., 2013 (link)). Slides were incubated with a mouse anti-FLAG monoclonal (Sigma-Aldrich) at 1:2000, mouse anti-V5 (Life Technologies, Carlsbad, CA) at 1:2000, polyclonal rabbit anti-Pds5 at 1:2000, or polyclonal rabbit anti-Mcd1 at 1:2000 dilutions. The primary antibody was diluted in blocking buffer (5% bovine serum albumin, 0.2% milk, 1× phosphate-buffered saline, and 0.2% Triton X-100). The secondary Cy3-conjugated goat anti-mouse antibody (115-165-003) was obtained from Jackson ImmunoResearch (West Grove, PA) and diluted 1:2000 in blocking buffer. Indirect immunofluorescence was observed using an Olympus IX-70 microscope with a 100×/NA 1.4 objective and Orca II camera (Hamamatsu, Bridgewater, NJ).
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8

Frog Blood Smear Microscopy

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A small drop of blood was collected from the frog foot with a sterile needle, and the drop was smeared on a slide. The smear was then fixed with methanol and stained with Giemsa stain (Sigma GS). Cell were imaged in brightfield using micromanager software (Edelstein et al., 2014 (link)) with an Olympus BX51 microscope equipped with an ORCA-II camera (Hamamatsu Photonics, Hamamatsu city, Japan).
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9

Azathioprine Effects on Actin Cytoskeleton

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Coverslips were coated with Oregon Green-conjugated gelatin (Invitrogen) as described (16 (link)). Cells were pretreated with azathioprine (0 or 5μM) for 48 hours, then replated on gelatin-coated coverslips for 7 hours (DanG) or 24 hours (BxPC3, CFPAC, CA1D) in the presence or absence of azathioprine. Coverslips were fixed, permeabilized, and stained for actin using TRITC-Phalloidin (Sigma). Fluorescence micrographs were acquired using a Zeiss Axiovert 35 epifluorescence microscope (Carl Zeiss) using a 63x objective and a Hamamatsu OrcaII camera (Hamamatsu Photonics) with iVision software. Images were processed using Adobe Photoshop software (Adobe). Adjustments were applied uniformly to the entire image. The percentage of cells degrading the matrix was scored. The area of degradation was quantified by the segmentation function using iVision software.
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10

Kinetochore distance measurement protocol

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Cells grown on 22-mm2 coverslips were simultaneously fixed and permeablized with 2% paraformaldehyde and 0.5% Triton X-100 in 1X PHEM buffer at room temperature for 15 min. The cells were blocked with 20% boiled normal goat serum (BNGS) for at least 20 min. Coverslips were incubated with primary antibody, Anti-­centromere antibody (1:800, Antibody Inc., 15-134), and rabbit anti SGO1 (1:500, a gift from Hongtao Yu, University of Texas Southwestern Medical Center) diluted in 5% BNGS in PBST overnight at 4°C. Coverslips were washed three times with MOPS buffered saline with 0.05% Tween 20 and then incubated in secondary antibody, goat anti-rabbit conjugated to CY3 at 1:1500 (JacksonImmuno­Research, 111-165-045109), and goat anti-human conjugated to fluorescein isothiocyanate at 1:800 (JacksonImmunoResearch, 109-95-088) for 2 h at room temperature. After incubation with secondary antibodies, coverslips were washed three times again and then labeled with DAPI (100 ng/ml) for 1 min. Coverslips were mounted on slides with Vectashield mounting media (Vector Laboratories, H-1000) and then sealed with clear nail polish. Fluorescence images of cells were taken using a Zeiss Axioplan II microscope with a Zeiss 100× objective, Hamamatsu Orca II camera, and Metamorph software. Distances between pairs of kinetochores were measured using the region measurement tool in Metamorph software.
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