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224 protocols using bcl xl

1

Quantifying MCL1 and BCL-XL Protein Levels

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Cells seeded and cultured for 24 h were lysed in RIPA lysis buffer and protein concentrations determined as above. Colorectal and melanoma PDX tumour tissue was homogenised and protein concentrations determined as described above. Recombinant protein standards for MCL1 (Cloud-Clone Corp, Texas, USA) and BCL-XL (R&D Systems, Abingdon, Oxfordshire, UK) were diluted in RIPA with 1 × Laemmli sample buffer to a concentration range of 2.5–100 nM. SDS-PAGE was then performed with 5–6 standards of 0.0375 pmol to 1.5 pmol MCL1 or BCL-XL protein to determine the levels of MCL1 and BCL-XL in 15 to 20 µg of total cellular protein by western blotting with anti-MCL1 antibody (Santa Cruz Biotechnology, Dallas, USA; sc-819) and anti-BCL-XL antibody (Cell Signalling Technology, NEB, Hitchin, UK; 2762) and using anti-rabbit fluorescently labelled secondary antibodies (Cell Signalling Technology, NEB, Hitchin, UK) diluted 1:15,000 and infrared imaging for quantification (LI-COR, Cambridge, UK).
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2

Western Blot and Immunohistochemistry Analysis of Signaling Pathways

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All sources of antibodies with name of antibodies, dilution ratio of antibodies, catalog numbers, and company in Western blot analysis study as follows: p-ERK1/2 (1:2000, #9101S, Cell Signaling Technology, Beverly, MA), ERK1/2 (1:2000, #9102S, Cell Signaling), p-p38 (1:1000, #9211S, Cell Signaling), p38 (1:1000, #9212S, Cell Signaling), p-JNK (1:500, #9251, Cell Signaling), JNK (1:1000, #9252S, Cell Signaling), JAK2 (1:1000, #3230, Cell Signaling), p-JAK2 (1:1000, #4406, Cell Signaling), STAT3 (1:1000, #12640, Cell Signaling), p-CREB (1:1000, #9191, Cell Signaling), PTEN (1:1000, #9552, Cell Signaling), Survivin (1:1000, #2808, Cell Signaling), Caspase-3 (1:1000, #9665, Cell Signaling), PARP (1:1000, #9542, Cell Signaling), Bcl-xL (1:1000, #sc-7195, Santa Cruz), β-actin (C4) (1:1000, #sc-47778, Santa Cruz), p-STAT3 (1:1000, #sc-8001, Santa Cruz).
For immmo(cyto)histochemistry study: Ki-67 (1:200, #sc-15402, Santa Cruz), PCNA (1:200, #sc-56, Santa Cruz), Survivin (1:200, #2808, Cell Signaling), Bcl-xL (1:200, #sc-7195, Santa Cruz), p-STAT3 (1:200, #sc-8001, Santa Cruz)
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3

Human HGF Signaling Pathway Analysis

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Human HGF were purchased from R&D systems. Akt, pAkt, ERK, pERK, E-cadherin, N-cadherin, vimentin, PARP, caspase-3, Bim, and Bax primary antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). β-actin, p38, pp38, JNK, pJNK, Bcl-xL, and HGF primary antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Met and pMet primary antibodies were purchased from Young-In frontier (Seoul, Korea). Goat anti-mouse and goat anti-rabbit horseradish secondary antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Primary antibodies were used in 1:1000 dilution and secondary antibodies were used in 1:10,000 dilution. The primers were obtained from Bioneer (Seongnam, Korea).
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4

Apoptosis Induction in Cancer Cells

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RPMI-1640, DMEM F-12, Opti-MEM reduced serum medium, FBS, PBS, Trypsin-EDTA, and penicillin–streptomycin solution were purchased from Invitrogen (Grand Island, NY, USA). Antibodies against STAT3, p-STAT3Tyr705, p-STAT3Ser727, poly(ADP-ribose) polymerase (PARP), caspase-3, Bcl-2, and survivin were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies against cyclin A, cyclin D1, Bcl-xL, Vascular Endothelial Growth Factor (VEGF), and p53 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Cell Counting Kit-8 was purchased from Dojindo Molecular Technologies (Rockville, MD, USA). Texas Red (TR)-conjugated dyes against goat anti-rabbit IgG-TR and DAPI were purchased from Santa Cruz Biotechnology. Dual Luciferase Assay kit was purchased from Promega (Madison, WI, USA). Ginkgetin, isoginkgetin, and sciadopitysin were isolated from dried G. biloba leaves.26
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5

Western Blot Analysis of Apoptosis and Signaling Pathways

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Cell pellets were resuspended in ice-cold lysis buffer (50 mM Tris-HCL pH 8, 150 mM NaCl, 0.5% sodium deoxycholate, 0.1% SDS, 1% NP40, 1 mM EDTA) supplemented with a mix of protease and phosphatase inhibitors (Thermo Fisher Scientific). Equal amount of protein extracts was resolved on SDS-PAGE gels and blotted on nitrocellulose membranes. Membranes were exposed overnight at 4 °C to PARP (#9524, rabbit, IgG, CST), Caspase-3 (#9662, rabbit, IgG, CST), cleaved Caspase-3 (Asp175) (#9661, rabbit, IgG, CST), Bcl-2 (sc-7382, mouse, IgG, Santa Cruz), Bcl-xL (sc-8392, mouse, IgG, Santa Cruz), PI3K (p110α) (#4249, C73F8, rabbit, IgG, CST), phospho-AKT (Ser473 XP) (#4060, D9E, rabbit, IgG, CST), AKT (#9272, rabbit, IgG, CST), PTEN (#9559, 138G6, rabbit, IgG, CST), phospho-JNK (Thr183/Tyr185) (#4668, 81E11, rabbit, IgG, CST), JNK (#9258, 56G8, rabbit, IgG, CST), phospho-ERK (sc-7383, E-4, mouse, IgG2a, Santa Cruz), ERK (sc-94, rabbit, IgG, Santa Cruz), p21 (#2946, DCS60, mouse IgG2a, CST), and β-actin (#3700, 8H10D10, mouse IgG2b, CST). Primary antibodies were detected using specific secondary HRP-conjugated antibodies (Thermo Fisher Scientific) and chemiluminescence signals were revealed using Amersham imager 600 (GE Healthcare). Protein expression levels were measured by densitometry analysis using ImageJ software.
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6

PEG-CdTe QDs-DMSO Cytotoxicity Assay

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PEG-CdTe QDs and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich (St. Louis, USA). DOX was obtained from Sigma (Wuhan, China). 1-(3-dimethylamino propyl)-3-ethyl carbon diimine hydrochloride (EDC) and N-hydroxysuccinide (sulfo-NHS) were offered by Sigma(Shanghai,China). Roswell Park Memorial Institute medium (RPMI) 1640 and fetal bovine serum (FBS) were bought from Gibco Chemical Co. (Carlsbad, CA, USA). Pierce™ bicinchoninic acid (BCA) protein assay kits, Annexin V-fluorescein isothiocyanate (FITC) apoptosis detection kits, and hematoxylin–eosin kits were provided by KeyGen Biotech Co., Ltd. (Jiangsu, China). Cell counting kit-8 (CCK-8) was obtained from Dojindo Molecular Technologies. Inc. (Nanjing, China). Monoclonal antibodies for CXCR4, SURVIVIN, Bcl-xl, cleaved caspase-3/9, and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) were made in Santa Cruz Biotechnology Inc. (CA, USA). All reagents were analytically pure.
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7

Zeylenone Nanomicelle Preparation and Evaluation

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Preparations of Zeylenone (Zey) and mPEG-PLGA-loaded Zeylenone nanomicelles were described previously [8 (link)]. Zey used for the in vitro studies was stored as 150 mM solutions in DMSO at −20 °C and further diluted to desired working concentrations before use (DMSO concentration <1%). The mPEG-PLGA-loaded Zeylenone nanomicelles used for the in vivo studies were stored in a dry container at room temperature.
RPMI-1640, DMEM, and fetal bovine serum (FBS) were purchased from Corning Inc. (Corning, NY, USA). MTT, Hoechst 33258, and fluorescent dye JC-1 were purchased from Sigma Aldrich (St. Louis, MO, USA). Antibodies against Bcl-2, Bcl-xl, MMP-9, and MMP-2 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against Bax, p-AKT, AKT, p-mTOR, pro-caspase3, p-ERK, ERK, and GAPDH, as well as all secondary antibodies, were purchased from Cell Signaling Technology (Danvers, MA, USA). An Annexin V-FITC/PI kit and Matrigel matrix were obtained from BD Biosciences (San Jose, CA, USA).
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8

Investigating Apoptosis Pathways in Cells

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3-(4,5-Dimethylthiazol-2-yl)-2, 5-diphenyl-tetrazolium bromide (MTT) was purchased from USB Corporation (USA). Pen strep, RPMI 1640, High Glucose DMEM, and Heat inactivated Fetal Bovine Serum (FBS), 5,5′,6,6′-tetrachloro-1,1′,3,3′- tetraethyl benzimidazolyl carbocyanine iodide (JC-1), and 5-(and-6)-chloromethyl-2′,7′-dichloro dihydrofluorescein diacetate (CM-H2DCFDA) were obtained from Invitrogen (Carlsbad, CA, USA). Caspase-3, Caspase-8, Caspase-9 colorimetric assay kits were procured from Biovision (Milpitas, CA, USA). The antibodies against Bcl2, Bcl-xl, Bax, Bad, β-Actin, and PARP, Alkaline phosphatase/Horseradish peroxidase conjugated secondary antibodies, and enhanced chemiluminescence kit were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA).
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9

Andrographolide-Induced Apoptosis Pathway

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Andrographolide was procured from Santa Cruz Biotechnology (Santa Cruz, CA, USA), dissolved in DMSO and kept at 4 °C at a concentration of 50 mM. AnnexinV-FITC Apoptosis Detection Kit was purchased from BD Pharmingen (Pharmingen, USA). Caspases fluoremetric assay kit was purchased from Chemicon International Corporation (USA). Ac-DEVD-CHO (caspase-3 inhibitor), and Ac-LEHD-CHO (caspase-9 inhibitor) were from Calbiochem (La Jolla, USA). Primary antibodies (Bcl-2, Bcl-xL, Bax, Apaf-1, cytochrome c, β-actin and COX IV) and polyclonal secondary antibody were obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, USA). The fetal bovine serum (FBS), Dulbecco’s Modified Eagle’s Medium (DMEM), and antibiotics were purchased from Gibco BRL (Grand Island, USA). Plastic wares for cell culture were procured from NUNC (Roskilde, Denmark). Other chemicals including 4, 6-diamidino-2-phenylindole (DAPI), 3[4-dimethylthiazol-2-71]-2-5-diphenyl tetrazolium bromide (MTT) were from Sigma-Aldrich (St. Louis, USA).
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10

Colorectal Cancer Cell Line Maintenance

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Human colorectal cancer HCT116 and HT-29 cell lines were purchased from the American Type Culture Collection. Cells were maintained in 10% fetal bovine serum (FBS)-supplemented RPMI 1640 medium (GIBCO, Grand Island, NY, USA) and 1% penicillin-streptomycin (GIBCO) at 37°C in a humidified incubator containing 5% CO2. 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), propidium iodide (PI), zVAD and all of the other chemical reagents were purchased from Sigma Chemical (St. Louis, MO, USA). Antibodies against various proteins were obtained from the following sources: PARP (Poly-ADP-ribose polymerase), Mcl-1, Bcl-2, Bcl-XL, survivin, cytochrome c, Bax, Bak, Bim, anti-mouse and anti-rabbit IgGs were obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, CA, USA). Phospho-Akt (Ser473), phospho-GSK-3β, Akt, phospho-p44/42 MAPK (1/2 Erk) (Thr202/Tyr204), p44/42 MAPK (1/2 Erk), caspase8, caspase 9, γH2AX, p21 and acetyl-α-tubulin were obtained from Cell signaling (Danvers, MA, USA)., Actin was obtained from Chemicon (Billerica, MA, USA). Acetyl-histone H3 and GPADH were from Millipore (Billerica, MA, USA). Caspase 3 and was obtained from IMGENEX (San Diego, CA, USA).
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