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97 protocols using ifn α

1

Stimulation and Inhibition of Mouse B Cells

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Human or mouse B cells were cultured in 96-well flat-bottom plates (Corning, Tewksbury, MA, USA) at 5 × 105 cells per well in 200 μl RPMI-1640 (Gibco, Grand Island, NY, USA) supplemented with 10% FBS (Gibco) and antibiotics (penicillin 100 μg/ml, streptomycin 10 μg/ml; Invitrogen Life Sciences, Carlsbad, CA, USA) in a humidified atmosphere of 5% CO2 at 37°C. For stimulation treatment, B cells were divided into four to six groups: Control (grown in normal media), IFN-α (1000 U/ml, eBiosciences, San Diego, CA, USA), R848 (1 μg/ml, Enzo Life Science, Farmingdale, NY, USA), affiniPure F(ab')2 Fragment Goat Anti-Mouse IgM (5 μg/ml, Jackson ImmunoResearch Laboratories, Inc., West Grove, PA, USA) plus anti-CD40 (2 μg/ml, eBiosciences), two joint stimuli (anti-IgM/CD40+R848) and three joint stimuli (anti-IgM/CD40+R848+IFN-α). Each group of B cells was stimulated respectively on the first day, and the culture medium was changed every other day. Mouse B cells without treatment as the control group were collected immediately after isolation from the spleen, and used to compare the target gene or protein expression level. In addition, mouse B cells were exposed to the stimuli after pretreated with inhibitor zVAD-fmk (Merck, Billerica, MA, USA), Necrostatin-1 (Merck) or Catalase (Beyotime, Nantong, China) for 1 h.
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2

Quantifying Cytokine Secretion via ELISA

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The levels of secreted IL-2, IL-15, IFN-α, and IFN-β in serum or culture supernatants were detected by ELISA kits IL-2 (eBioscience, San Diego, CA, USA, sensitivity 2 pg/ml), IL-15 (eBioscience, sensitivity 20 pg/ml), IFN-α (Invitrogen, San Diego, CA, USA, sensitivity 3.2 pg/ml), and IFN-β (PBL assay science and assay range 50–4,000 pg/ml), according to the manufacturer's instruction.
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3

Induction of mViperin by IFN-α in PRRSV

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To investigate the induction of mViperin by IFN-α, Marc-145 cells were seeded onto 12-well plates for 24 h and treated with IFN-α (Peprotech, Rocky Hill, USA) at various concentrations of 0, 300, 1000 and 3000 U/mL, respectively. Twenty-four hours later, the cells were challenged with PRRSV at 0.1 multiplicity of infection (MOI). After being incubated for 12, 24, 36 and 48 h, the cells were harvested, and both mViperin and PRRSV were detected by real-time PCR and western blotting [41 (link)].
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4

Raloxifene Modulates Signaling Pathways

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Cancer cells were treated with different concentrations of Raloxifene (50, 75 μmo/L) or DMSO for 24 h. For interleukin-6 (IL-6), interleukin-4 (IL-4), IFN-γ, IFN-α and LIF treatments, Hep-3B liver cancer cell were pretreated with Raloxifene (50, 75 μmo/L) or DMSO for 2 h and IL-6, IL-4, IFN-γ, IFN-α or LIF (Pepro Tech) were then added for 30 minutes before cells were collected. The collected cells were washed with cold PBS and lysed in a modified RIPA buffer (1% Triton X-100, 1% deoxycholate, 0.1%SDS) containing protease inhibitors (1 mM PMSF) and phosphatase inhibitors (1 mM), then subjected to SDS-PAGE. Primary antibodies (Cell signaling Tech) against phospho-specific STAT3 (Tyrosine 705) (P-STAT3, Y705), STAT1 (Tyrosine 701) (P-STAT1, Y701), STAT6 (Tyrosine 641) (P-STAT6, Y641), ERK1/2 (Threonine 202/Tyrosine 204) (P-ERK, T202/Y204), cleaved caspase-3, STAT3, Bcl-2, Bcl-xl, survivin and GAPDH were used for western blot. Then HRP-conjugated secondary antibodies purchased from Santa Cruz Biotechnology were used. The specific proteins were detected with an enhanced chemiluminescence (ECL) Western Blotting kit according to the manufacturer's instructions.
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5

Vaginal Viral Titer Quantification

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Vaginal fluids were collected on the indicated days by pipetting a volume of 50 μL of PBS in and out of the vagina 20 times. Viral titers were measured by titration of vaginal fluids on Vero cells for 72 h in duplicate as described previously37 (link). The levels of IFN-α (eBioscience, San Diego, CA) and IFN-λ (R & D systems, Minneapolis, MN) in vaginal fluids were measured by ELISA according to manufacturer’s instructions.
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6

Culturing Murine T Lymphoma and CD8 T Cells

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The murine T lymphoma cell line EL4 was obtained from the American Type Culture Collection. Primary splenic CD8 T cells were isolated from C57BL/6 mice by magnetic bead separation (Miltenyi Biotech Inc., Auburn, CA) according to manufacturer’s recommendations. All cells were cultured in RPMI 1640 supplemented with 5% fetal bovine serum (Sigma-Aldrich Co, St. Louis, MO), 5% bovine calf serum (Thermo Fisher Scientific Inc., Waltham, MA), 10mM HEPES, 1mM sodium pyruvate, 4.5 g/L glucose, and 100 U/ml penicillin/streptomycin. Cells were treated with 50 ng/ml phorbol 12-myristate 13-acetate (PMA) (Sigma-Aldrich), 2 μM ionomycin (Io) (Sigma-Aldrich), 1 μg/ml cyclosporin A (CsA) (Sigma-Aldrich), 500U IFN-α (eBioscience Inc., San Diego, CA), 20 ng/mL IL-2 (Miltenyi) 10 ng/mL IL-4 (Miltenyi), 20 ng/mL IL-6 (Miltenyi), 20 ng/mL IL-12 (Miltenyi), 20 ng/mL IFN-γ (Miltenyi), or CD3/CD28 activation beads (Life Technologies Co, Grand Island, NY) according to manufacturer’s protocol where indicated. All mouse experiments were conducted in accordance with approved Emory University institutional animal care and use protocols.
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7

Serum Biomarker Measurement Protocol

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Serum levels of IL-9, IL-17a, TGF-β, IL-10, TNF-α, IFN-γ, IFN-α, and IFN-β were determined using sensitive mouse IL-9 (Biolegengd), TNFα/IFN-γ/TGF-β/IL-10/IL-17a (Neobioscience), IFN-α (eBioscience), and IFN-β (Pbl Assay Science) kits, according to the manufacturers’ instructions. No cross-reactivity was detected. Blood concentrations of serum cardiac troponin (cTn) T were measured using a quantitative rapid assay kit (Roche Diagnostics GmbH Elecsys, Shanghai, China) as previously described (11 (link)). All the samples were measured in triplicate.
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8

Stimulation and Cytokine Profiling of Human PBMCs

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Human PBMCs were isolated from heparinized blood of healthy volunteers upon informed consent and approval by the local ethical committee (admission number: S-716/2017) by standard Ficoll-Hypaque density gradient centrifugation (Ficoll 1.078 g/mL). PBMCs were resuspended in RPMI 1640 supplemented with 2% heat-inactivated human serum. For transfection experiments, all RNAs were encapsulated with DOTAP at a ratio of 3 µL DOTAP per 1 µg of RNA in serum-free medium according to the manufacturer's protocol. Unless otherwise indicated, cells were stimulated with RNA preparations at a final concentration of 500 ng/mL, and transfection was performed at a density of 2 × 105 PBMCs per well in a 96-well flat bottom plate at a final volume of 100 µL. Cells were incubated overnight in a humidified 5% CO2 atmosphere at 37°C. For cytokine measurement, levels of TNF, IL-6 (BD), and IFN-α (eBioscience) were determined in cell-free supernatants by ELISA.
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9

Cytokine Profiling of Tissue Homogenates

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Tissue homogenates, after aliquoting for bacterial burden assay, were spin at 12000rpm for 10 min to prepare debris/particulate-free clear homogenates. Cleared homogenates were stored frozen or processed immediately for cytokine/chemokine measurement. Lung homogenates were analyzed for cytokines and chemokines by using Mouse Group I and II Luminex assay kits (BioRad). In addition, measurement of IL-17A, TGFβ, IFNα (eBioscience), IFNβ (PBL Assay), PGE2 and LTB4 (Caymen) were performed using commercial ELISA kits.
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10

Comprehensive Immune Profiling Assay

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These were selected on the basis of being largely representative of T-cell, monocyte/macrophage, dendritic cell, and natural killer cell activation.
Circulating cytokines/chemokines were measured using (i) the Bioplex suspension bead array system (Bio-Rad Laboratories Inc., Hercules, CA, USA) (IL-6, IL-10, IFN-γ, TNF-α, CCL2/MCP-1, CCL3/MIP-1α, CCL4/MIP-1β, and CXCL10/IP-10) or (ii) conventional ELISA, namely, IFN-α (eBioscience Inc., San Diego, CA, USA); TGF-β1 total (Biolegend, San Diego, CA, USA); CXCL9/MIG and sTNF-R1 (Raybiotech Inc., Norcross, GA, USA); and sCD14 (Abcam, Cambridge, MA, USA). C-reactive protein (CRP) and β2-microglobulin (β2M) were assayed by nephelometry (Siemens healthcare Diagnostics, BN Prospec Nephelometer, Newark, USA). Previously published ranges for each of these parameters together with supporting references are shown as supplementary data (see Supplementary Material available online at http://dx.doi.org/10.1155/2014/198413).
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