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3 protocols using irdye 680 conjugated goat anti rabbit

1

Analyzing Retinal Protein Expression in AION

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We dissected retinae 1 day after AION induction and prepared retinal lysates. We extracted total protein in 1× radioimmunoprecipitation assay buffer (Abcam, Burlingame, CA, USA). For Western blot analysis, equal amount of protein (25 to 50 μg) was resolved by 12% Criterion XT Bis-Tris protein gel electrophoresis and transferred to polyvinylidene difluoride membranes (all from Bio-Rad, Hercules, CA, USA). Membranes were blocked with Odyssey Blocking Buffer (LI-COR, Lincoln, NE, USA) and incubated with primary antibodies against CHOP (mouse, 1:1000, Thermo Fisher Scientific, Waltham, MA, USA), control protein glyceraldehyde 3-phosphate dehydrogenase (GAPDH; rabbit, 1:2000, Cell Signaling, Danvers, MA, USA) or GRP78 (mouse, 1:1000, BD Biosciences, Franklin Lakes, NJ, USA), followed by incubation with IRDye 680-conjugated goat anti-rabbit or IRDye 800-conjugated goat anti-mouse secondary antibodies (LI-COR). We visualized positive bands on immunoblots using the Odyssey Classic Imaging System and performed densitometry analysis using Image Studio software (LI-COR).
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2

Molecular Mechanisms of Herpes Virus Regulation

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Wogonin and acyclovir were obtained from the National Institutes for Food and Drug Control in China (Beijing, China). SB203580, SP600125, and MG132 were purchased from Beyotime Biotechnology Institute (Haimen, Jiangsu, China). Alexa Fluor 488-conjugated goat anti-mouse IgG (H + L), DAPI, DRAQ5 and SYBR green real-time PCR reagent were obtained from Life Technologies, Thermo Fisher Scientific (Carlsbad, CA, USA). IRDye 680-conjugated goat-anti-rabbit and IRDye 800-conjugated goat-anti-mouse antibodies were obtained from LI-COR (Lincoln, NE, USA). Antibodies specific for HSV-1/2 gD, HSV-1 ICP0, HSV-1 ICP4, HSV-1 ICP27, JNK2, p38, GAPDH, and RIPA lysis buffer were purchased from Santa Cruz (Santa Cruz, CA, USA). p65, p-p38, p-c-Jun, p-JNK1/2, p-ATF-2, and IκB-α antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). Bright-Glo luciferase assay system was purchased from Promega (Madison, WI, USA).
Vero and HEC-1-A cells were obtained from the American Type Culture Collection (ATCC, Manassas, VA, USA). NF-κB-luc and AP-1-luc reporter plasmids were purchased from Clontech (Palo Alto, CA, USA). HSV-1(HF), HSV-1/blue and HSV-2 (G) were propagated and titrated in Vero cells as described previously [36 (link)].
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3

Western Blot Protein Detection

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Protein lysates were separated on a 10% SDS-PAGE gel and transferred to PVDF-FL membrane (EMD Millipore). Membranes were blocked using Odyssey blocking buffer (LI-COR, Lincoln, NE). Blots were probed with primary antibodies against DPD and alpha-tubulin (both AbCam, Cambridge, MA) and subsequent secondary IRDye800 conjugated goat anti-mouse and IRDye 680 conjugated goat anti-rabbit (both LI-COR). Blots were scanned and band intensities quantified using the Image Studio 3.1 and LI-COR Odyssey Infrared Imaging system according to manufacturer’s instructions.
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