The largest database of trusted experimental protocols

Agar

Manufactured by Merck Group
Sourced in United States, Germany, United Kingdom, Spain, India, France, China, Italy, Ireland, Romania, Australia, Belgium, Hungary, Austria, Greece, Switzerland

Agar is a gelatinous substance derived from red algae that is commonly used as a growth medium in microbiology. It provides a solid, nutrient-rich substrate for the cultivation of various microorganisms, including bacteria, fungi, and some algae. Agar is known for its thermal stability, resistance to microbial degradation, and ability to support the growth of a wide range of microbes.

Automatically generated - may contain errors

598 protocols using agar

1

Soft Agar Colony Formation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were trypsinized and suspended in 2 mL of complete medium with 0.3% agar (Sigma Chemical Company, Louis, MO, USA), and then the agar-cell mixture was plated onto the bottom layer with 1% agar in complete medium. After being cultured in an incubator for 4 weeks, cells were observed and photographed under a microscope.
+ Open protocol
+ Expand
2

Characterization of E. coli Phage Ace

Check if the same lab product or an alternative is used in the 5 most similar protocols
E. coli phage vB_EcoS_Ace (Ace), previously isolated and characterized12 (link), and strain E. coli O157:H7 CECT 5947 (Δstx2::cat) were used in this study. Both phage Ace and E. coli 5947 were propagated at 37 °C in LB broth (all reagents are from Sigma-Aldrich (Merk), Darmstadt, Germany), with or without agar (Merck, Darmstadt, Germany) (1.2% for the bottom layer and 0.4% for soft agar overlays). Chloramphenicol (Sigma) supplementation at 25 µg/mL, was used as selective marker for E. coli CECT 5947 enumeration in LB agar plates during the in vitro fermentations.
+ Open protocol
+ Expand
3

Counting Microbial Populations in Fermentations

Check if the same lab product or an alternative is used in the 5 most similar protocols
Yeast, lactic acid bacteria (LAB), and acetic acid bacteria (AAB) counts were performed on yeast extract peptone glucose [YEPG: 1% yeast extract, 2% peptone (Himedia, Mumbai, India), 2% glucose at pH 3.5, containing 100 mg L−1 chloramphenicol (Sigma, St. Louis, Missouri, USA), and 2% agar (Merck, Darmstadt, Germany)] for yeast, De Man Rogosa Sharpe agar [MRS (Merck), containing 0.4% (v/v) nystatin (Merck)] for LAB counting, glucose yeast extract [GYC: 5% glucose (Merck), 1 g yeast extract (Merck), 3 g calcium carbonate (Merck) for AAB, and 2 g agar (Merck) per liter, pH 5.6].
+ Open protocol
+ Expand
4

Preparation of Selective Growth Media

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mueller-Hinton (Beckton-Dickinson, Sparks, MD, USA) and LB-plates (Merck, Darmstadt, Germany) were prepared with 13 g/l agar (Merck), and RH-plates were made by autoclaving 100 ml milliQ water with 7.5 g agar, cooling it to 55°C and mixing with 500 ml modified RPMI-medium (Sigma, R7388) prewarmed to 55°C. +U, +C, and +Mg, indicates addition of 20 mg/l uracil, 10 mg/l chloramphenicol, and 5 mM MgCl2, respectively.
+ Open protocol
+ Expand
5

Fungal Cell Cultivation and Infection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sabouraud broth containing 0.5% Witte’s peptone, 2% glucose and 1.8% agar ((Sigma-Aldrich, Budapest, Hungary), in distilled water was autoclaved at 121 °C for 20 min at pH 6.0 and was used to prepare agar slant tubes. Streaking to plate out cells across the surface of the agar slants took place with the sterile loop of the wire inoculator containing a drop of cell culture. Fungal cells were incubated for six days at 34 °C. Spores were removed with 50 mL physiological salt solution (saline) and completed with saline to 100 mL, shaken for 24 h at 28 °C to get homogeneous distribution. After counting the living cell number (e.g., Fusarium), cell suspensions were stored in a refrigerator at 5 °C until further use. For infection, the initial germ number of the suspension for Fusarium and Trichophyton species was diluted to 105 spores/mL, for Microsporum gypseum 106 spores/mL. For the other fungi, including the yeast Candida species, the initial cell number was set to 2 × 104 cells/mL. In vitro incubations in duplicate samples lasted for six days at 34 °C.
+ Open protocol
+ Expand
6

Murine Phagocytosis Assessment Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sheep red blood cells (SRBCs) were purchased from South Pacific Sera Co. (Timaru, New Zealand), and Earle’s balanced salt solution (EBSS), DEAE-dextran, agar, 2-mercaptoethanol, guinea pig complement, agar, and cyclophosphamide (CY) reagents were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). Roswell park memorial institute medium (RPMI1640), fetal bovine serum (FBS), penicillin–streptomycin, L-glutamine, and hydroxyethyl piperazine ethane sulfonic acid (HEPES) buffer were purchased from Gibco Co. (Rockville, MD, USA), and ammonium-chloride-potassium (ACK) lysis buffer was purchased from Lonza Co. (Walkersville, MD, USA). Antibodies, including purified anti-mouse CD16/CD32 Fc receptor, peridinin chlorophyll-a protein (PerCP)-conjugated anti-mouse CD3e (clone: 145-2C11), R-phycoerythrin (R-PE)-conjugated anti-mouse CD45R/B220 (clone: RA3-6B2), and fluorescein isothiocyanate (FITC)-conjugated anti-mouse CD11b (clone: M1/70) were purchased from BD Pharmingen Inc. (San Diego, CA, USA), and the phagocytosis assay (IgG FITC) kit was purchased from Cayman Chemical Co. (Ann Arbor, MI, USA).
+ Open protocol
+ Expand
7

Generating Transgenic Ceratopteris richardii Plants

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ceratopteris richardii strain Hn-n40 (link) was used in this study to generate the transgenic plants. Gametophytes were grown on FM plates (pH 6.0) containing 0.5 × MS salts (PhytoTechnology Laboratories) and 0.7% (w/v) agar (Sigma-Aldrich). Sporophytes were formed on fertilized gametophytes and were transferred to soil, typically after 3–4 weeks of fertilization. Both gametophytes and young sporophytes were grown under continuous light at 28 °C. Adult sporophytes were grown in the LILY greenhouse facility at Purdue for harvesting spores.
Ceratopteris calli were induced from young sporophytes (shoot tips or fronds) on the callus induction medium (pH 5.8) that contains 1 × MS salts (PhytoTechnology Laboratories), 2% (w/v) sucrose, 1 mg/L benzylaminopurine (BAP), and 0.7% agar (Sigma–Aldrich). Calli were cultivated under continuous light at 28 °C in the growth chamber (Percival).
+ Open protocol
+ Expand
8

Mannitol and PEG Stress Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
For mannitol (Sigma-Aldrich, Saint Louis, MO, USA) treatment, seeds were plated on 1/2 MS medium, pH 5.7, containing 1% agar, vertical cultured for 4 days, and transferred to 1/2 MS medium containing 0, 100, 200, and 300 mM mannitol; the position of root tips was marked. Root length was measured after 3 days of growth. For PEG treatment, PEG (PEG8000, Sigma-Aldrich, Saint Louis, MO, USA)-infiltrated plates were prepared according to Verslues et al. [8 (link)] using 10 × 10 square Petri dishes and the PEG-infused plates were allowed to rest for 12 hours before use. The water potential of the plates was measured with a Dewpoint Potential Meter (WP4C, Pullman, WA, USA). Seeds were vertically grown in 1/2 MS medium (pH 5.7) containing 6 mM MES (Sigma-Aldrich, Saint Louis, MO, USA) and 1.5% agar (Sigma-Aldrich, Saint Louis, MO, USA) for 4 days, transferred to PEG-infiltrated plates; the position of root tips was marked and grown for 3 days. The plates were photographed, and root length from the marked position to the new position of the root tip was measured with ImageJ 1.48v software (National Institutes of Health, USA).
+ Open protocol
+ Expand
9

Pollen Tube Germination and Imaging in Arabidopsis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Transgenic Arabidopsis thaliana plants were grown at 22°C in growth rooms under a light regime of 16h of light and 8 h of dark. Pollen tubes were germinated on a solid pollen culture medium containing 18% (w/v) sucrose (Sigma-Aldrich), 0.01% (w/v) boric acid (Fisher), 1 mM CaCl2 (Sigma-Aldrich), 1 mM Ca(NO3)2 (Sigma-Aldrich), 1 mM MgSO4 (Sigma-Aldrich), and 0.5% (w/v) agar (Sigma-Aldrich). Pollen tubes were incubated at 28°C for 3 hours before cFRAPc imaging. For drug treatment, BFA (Sigma-Aldrich) or LatB (Sigma-Aldrich) dissolved in DMSO was added to liquid pollen culture medium (same as solid pollen culture medium except without agar) to a final concentration of 2 ng/ml or 5 nM, respectively. The liquid medium with drugs was then added to pollen tubes 45 minutes before imaging.
+ Open protocol
+ Expand
10

Osteosarcoma Cell Colony Formation

Check if the same lab product or an alternative is used in the 5 most similar protocols
To perform colony formation assays, the inside bottoms of 60 mm dishes were coated with 0.5% agar (Sigma), and then another layer of treated osteosarcoma cells, 1 × 103 cells per dish, that had been mixed with 0.3% soft agar was added on top. These plates were incubated for up to 2 weeks, and the assays were stopped when the colonies were clearly visible by eye.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!