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466 protocols using eclipse te300

1

Fluorescent Imaging of GFAP-Cre and Periostin-Cre Mouse Tissues

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For eight-week-old GFAP-Cre; Rosa Green and Periostin-Cre; Rosa Green mouse nerves and bones, images were acquired at 100x magnification on a Nikon Eclipse TE300 fluorescence inverted microscope equipped with an optical camera (Leica DFC 3000G) and analyzed using Leica Application Suite Advanced Fluorescence 3.20.9652. Seven day post-injection images were acquired at 200x magnification on a Nikon Eclipse TE300 fluorescence inverted microscope equipped with an optical camera (Leica DFC 3000G). Images from tumor bearing mice were acquired at 400x magnification using an Olympus BX51 camera.
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2

Wound Healing Closure Assay

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Confluent cells were pre-treated for 30 min with Mytomicin C (25 µg/mL, Sigma-Aldrich, M0503) to inhibit cell proliferation. After washing with PBS, a straight scratch was performed and fresh medium without serum was added. Cells were allowed to migrate for 6–24 h at 37 °C and 5% CO2. Migration was monitored by phase-contrast microscopy (Eclipse TE300 Nikon, Tokio, Japon, coupled to a digital camera). Photographs were taken to quantify (using TScratch program version 1.0 [62 (link)]) the percentage of wound healing closure at different times referred to the value at time 0.
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3

Mitomycin C-Inhibited Wound Healing Assay

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Confluent cells were pre-treated with mitomycin C (25 μg/ml, Sigma-Aldrich M0503) for 30 min to inhibit cell growth. Then, a straight scratch was performed and the medium replaced by a fresh one without serum (for MEFs) or with 2% FBS (for HCT116 cells). Cells were maintained for 8h-48h at 37°C and 5% CO2. Migration was followed by a phase-contrast microscope (Eclipse TE300 Nikon coupled to a digital camera) at different time points. Photographs were taken to quantify (using TScratch program) the percentage of wound healing closure at the different times.
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4

Polydatin Modulates Saos-2 Cell Migration

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Saos-2 cells were seeded in 6-well plates under normal culture conditions at the density of 5.0 × 105 cells/well. Once it reached ~90% confluence, the medium was removed and the cell monolayer was scratched across the center using a sterile pipet tip (200 μL) to produce a uniform wound area. Through gently washing with sterile PBS1X, cellular debris was removed from the well and the cells incubated with 48 μM of polydatin. Cell migration was monitored by microscopy using an inverted light microscope (Eclipse TE 300 Nikon, New York, USA), and images were captured (10x magnification) at different time points after the scratch (0–48 h). The images acquired were analyzed quantitatively, using a specific wound healing tool of ImageJ software (Maryland, USA). The percentage of relative wound closure was assessed according to the following equation [23 (link)]:
Woundclosure%=W0WnW0×100, in which Wn is the width of the cut after the treatment time and W0 is the width of the scratch before treatment.
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5

Quantifying Hepatic Steatosis and Inflammation

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Liver tissue was harvested at ZT 6 (12 p.m.) following fasting from ZT 0 (6 a.m.) on the final day of the experiment. Hepatocellular steatosis was measured by Oil Red O staining on 7 μm cryosections of liver tissue [30 (link)]. Images were scanned by bright-field light microscopy (Eclipse TE300, Nikon, NY, USA) at ×20 magnification. The area of Oil Red O lipid staining was measured using Image J software (Version 1.54g) [47 (link)]. Hepatic steatosis was further assessed by hematoxylin and eosin (H&E) staining of 5 μm liver tissue sections of paraffin-embedded liver tissue. Images were scanned by a Nanozoomer 2.0HT Slide Scanner (Hamamatsu Photonics, Bridgewater, NJ, USA), and the number and area of lipid droplets (stained negative for H&E) were measured using Image J. Hepatic inflammation was assessed by counting infiltrating immune cells in the H&E-stained sections. Inflammation scoring was performed by a trained pathologist blinded to the sample identities. Liver fibrosis was assessed by Sirius Red staining and quantified by Image J.
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6

Immunochemical Analysis of Tissue Samples

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Formalin-fixed, paraffin-embedded tissue sections were deparaffinized, rehydrated, and subjected to epitope retrieval using standard procedures. Antibodies against ColA1 (Santa Cruz Biotechnology), PGC-1α (Novus Biologicals), peroxisome proliferator-activated receptor alpha (PPAR-α; Cell Signaling Technology), and optic atrophy 1 (OPA1; Santa Cruz Biotechnology) were used for immunochemical staining. Sirius red staining was performed using the Sirius Red Staining Kit (Polysciences) according to the manufacturer’s protocol. Samples were examined under a laser-scanning microscope (Eclipse TE300, Nikon) [10 (link)].
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7

EGFP Detection in Fluorescence Microscopy

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Fluorescence was visualized using an inverted microscope (Nikon Eclipse TE300, Nikon, Tokyo, Japan). After selecting a 510/20-nm bandpass filter for EGFP detection, EGFP-positive mice were identified.
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8

Kalirin and Huntingtin Immunofluorescence

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Immunofluorescence analysis was performed as standard procedures. In brief, NRK cells or primary mouse cortical neurons at DIV9 on glass coverslips were washed twice in PBS, fixed in 4% paraformaldehyde/PBS at room temperature for 15 min, incubated with 50 mM NH4Cl to quench free aldehyde groups, washed twice in PBS and labeled with primary antibodies against pan-kalirin (polyclonal against the 4 to 7 spectrin repeats of kalirin; EMD Millipore) and Htt (MAB2166). Targeted proteins were visualized by incubation of cells on glass coverslips with secondary antibodies conjugated with BODIPY or Cy-3 (Jackson Laboratory). Microscopy was performed using a 60x or 100x oil Nikon Plan Apo objective lens mounted on an inverted Nikon Eclipse TE300 fluorescent microscope. Images were collected using a Bio-Rad Laser-sharp confocal system equipped with krypton-argon and blue diode lasers, and merged using PhotoShop.
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9

Quantifying Cytomegalovirus Infection

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Samples were serially diluted and used to infect HFFs in triplicate for determining concentration of viral stocks and in duplicate for inhibitor experiments, all in 96 well plates. After 48 h, cells were washed with PBS, fixed in ice-cold methanol for 5 min, stained with primary mouse anti-IE1 antibody (kind gift of Bill Britt) followed by anti-mouse Alexa fluor-555-conjugated secondary antibody (ThermoFisher). Plates were imaged at 10X on a Nikon Eclipse TE300 by scanning each well in which 50–150 infected cells could be counted for infectious unit/mL (IU/mL).
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10

Evaluating Adipocyte Size in eWAT

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Formalin eWAT samples were embedded in paraffin and 5 µm sections made with a microtome (HistoCore Multicut, Leica Biosystems, Nanterre, France) were placed on glass slides for staining. To evaluate adipocyte size, the eWAT tissues were stained by hematoxylin QS (Vector Laboratories, Newark, CA, USA). The sections were mounted in mounting medium, Entelan (Merck, Saint-Quentin-Fallavier Cedex, France) and examined under a light microscope (Nikon Eclipse TE300). For each sample, quantification was performed with Image J 1.53c software on 10 photos taken at 200-fold magnification. Adipocyte size and distribution were calculated according to Parlee’s article [26 ].
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