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16 protocols using goldenstar rt6 cdna synthesis mix

1

Multifunctional Polymeric Nanoparticles for Theranostics

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N-isopropylmethacrylamide (NIPMAM) and N,N’-bis(acryloyl)cystamine (BAC) were purchased from Sigma-Aldrich (St Louis, MO, USA). Methacrylic acid (MAA) was purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China). Potassium persulfate (KPS) and sodium dodecyl sulfate (SDS) were purchased from Aladdin Reagent Inc. (Shanghai, China). Doxorubicin·HCl (DOX·HCl) was purchased from Meilun Biotech Co., Ltd. (Dalian, China). Indocyanine Green was purchased from J&K Scientific Ltd. (Beijing, China). Rhodamine B, 4-dimethylaminopyridine (DMAP), N,N’-Dicyclohexylcarbodiimide (DCC) and 2-hydroxyethyl methacrylate (HEMA) were purchased from Energy Chemical (Shanghai, China). Pitstop 2 was purchased from MedChemExpress (Shanghai, China). RNAprep FastPure, GoldenstarTM RT6 cDNA Synthesis Mix and Master qPCR Mix were purchased from Tsingke Biotechnology Co., Ltd. (Beijing, China).
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2

Validating RNA-Seq DEG Expressions in Salinity Tolerance

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The expression levels of 16 DEGs (6 in the roots, 6 in the leaves, and 4 in both the roots and the leaves) involved in metabolic pathways were examined using qRT-PCR to validate their analysis using RNA-Seq data (Maher et al., 2021 (link)). The genes were selected to cover all the possible pathways and/or mechanisms identified as involved in the salinity tolerance in the studied plant. GoldenstarTMRT6 cDNA Synthesis Mix (gDNA remover and Rnasin selected; TSINGKE, China) was used to construct cRNA molecules from each mRNA. The mRNA molecules were amplified by qRT-PCR using 2 × TSINGKE Master Qpcr Mix (SYBR Green I). Expression of each examined gene was normalized to the reference gene, BnActin7 gene. The relative quantitative expression levels of the DEGs were determined using the 2–ΔΔCt method (Schmittgen and Livak, 2008 (link)). The primers used for each gene designed using the Primer3 software are shown in the Supplementary Table 1.
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3

Transcriptome Analysis of A. alternata Mutants

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For RNA-seq analyses, total RNA isolated from conidial suspensions of WT, ∆AaSho1 and ∆AaSho1-C mutant strains cultured on Gelbond PAG film coated with fruit wax for 6 h. The whole genome of A. alternata was download form NCBI (https://www.ncbi.nlm.nih.gov/datasets/taxonomy/5599/). The sequencing and transcriptome analyses were based on those of Li et al. [30] (link) and Gai et al. [31] (link). For each treatment, three independent replicates were performed.
For qRT-PCR, the total RNA was collected through the TRIzol Universal Reagent (Accurate Biology, Hunan, China), and the First-strand cDNA was obtained by the Goldenstar™ RT6 cDNA Synthesis Mix (Tsingke Biotechnology, Beijing, China). qRT-PCR was performed on the ABI7500 real-time thermal cycler (Applied Biosystems) using SYBR Premix Ex TaqTM II (Tli RNaseH Plus) ROX plus (Takara, Dalian, China). The methods used to process the data are described in Qin et al. [32] (link). The qRT-PCR primers were listed in Table S1. For each treatment, three independent replicates were performed.
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4

Quantitative Gene Expression Analysis

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Total RNA was extracted from the samples using the Pure Plant Total RNA Extraction Kit (TSINGKE, Beijing) as described in the manufacturer’s instructions. The ratio of absorbancy at 260–280 nm was measured by Nanophotometer of Implen (Implen, Germany). RNA integrity was detected by agarose gel electrophoresis. All samples were stored at-80°C. All RNA samples served as templates for the cDNA synthesis by the Goldenstar RT6 cDNA Synthesis Mix(TSINGKE, Beijing). The reverse transcribed products was kept at −20°C.
Quantitative real-time PCR (qRT-PCR) was performed with Step One Plus real-time quantitative PCR instrument (Thermo Fisher, America) and using the SYBR Green I PCR master mix kit (TSINGKE, Beijing) according to the Cmanufacturer’s instructions. The relative amount of gene expression was calculated using the expression of actin as internal control gene. qRT-PCR primers were as following (Table 1). The relative quantity of gene expression was calculated using 2–ΔΔCT method (Livak and Schmittgen, 2001 (link)).
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5

Quantifying Gene Expression in Stem Development

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Total RNA was extracted from the stem samples at four stem swelling periods (stem diameters were 2 cm, 4 cm, 6 cm, and 8 cm) using the total RNA kit (Tiangen, Beijing, China). For cDNA synthesis, 1.0 µg RNA was reverse transcribed with oligo (dT) and random primers using the Goldenstar™ RT6 cDNA Synthesis Mix (TsingKe, Beijing, China). qRT-PCR was conducted with a Bio-Rad CFX96™ real-time PCR System (Bio-Rad, CA, USA) using 2 ×T5 Fast qPCR Mix (SYBRGreenI) (TsingKe, Beijing, China). All primers used are shown in Table S2. All experiments were performed with three independent RNA samples, and Actin2 (BjuB008540) was used as the internal control to normalize the gene expression. The relative mRNA expression was calculated using the 2−ΔΔCT method (Pfaffl, 2001 (link)).
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6

qRT-PCR Quantification of Gene Expression

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qRT-PCR utilized cDNA as a template. Amplification was performed with 2×TSINGKE Master qRT-PCR Mix (SYBR Green I) and GoldenStar™ RT6 cDNA Synthesis Mix (TSINGKE, China) on an Applied Biosystems ABI 7500 (Foster City, CA USA). Primers designed with Snap Gene (v4.3.6, Table S5) were used. Baseline and threshold cycles (Ct) were calculated by the system’s software. Data analysis used Actin expression for normalization.
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7

Quantitative Real-Time PCR Amplification

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The qRT-PCR was performed using cDNA templates. Each cDNA of the mRNA was amplified by qPCR using 2× TSINGKE Master qPCR Mix (SYBR Green I) and Goldenstar™ RT6 cDNA Synthesis Mix (TSINGKE, Beijing, China).
Applied Biosystems, Foster City, CA USA) using the SYBR-Green (Takara, Dalian, China) method. The primers were designed using SnapGene (version 3.5, Table S3). Each reaction was carried out with a volume of 20 μL, which contained 10 μL SYBR, 8.6 μL ddH2O, 1 μL diluted template (1 μL of the generated first-strand cDNA diluted by 9 μL ddH2O) and 0.2 μL of each of two gene specific primers. The following program was used conditions: 94 °C for 30 s (pre-denaturation) followed by 40 cycles at 94 °C for 30 s (denaturation), 60 °C for 20 s (primer annealing) and 72 °C for 43 s (extension and gathering the fluorescent signal). At the end, the melting curve analysis was executed for verifying the specificity of the primer with the following program: 95 °C/15 s, 60 °C/1 min, and 95 °C/15 s. The baseline and threshold cycles (Ct) were automatically determined by the own software of the system. Transcript levels were normalized against the average expression of the Actin gene.
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8

Endometrial FGFR2 Expression Analysis

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Total RNA from endometrial tissues and ESCs was extracted using a Total RNA Extraction Kit (Solarbio, China). Goldenstar RT6 cDNA Synthesis Mix (Tsingke Biotechnology, China) and 2× T5 Super PCR Mix (Basic) (Tsingke Biotechnology, China) were used for reverse transcription and quantitative PCR, respectively. Relative FGFR2 expression was calculated by normalizing to β-actin using the 2−ΔΔCq method (22). The primer sequences used were as follows: FGFR2 forward 5’-CCTGGATGTTGTGGAGCGAT-3’, reverse 5’-CTGTTACCTGTCTCCGCAGG-3’; β-actin forward 5’-GATTCCTATGTGGGCGACGA-3’, reverse 5’-CACAGGACTCC ATGCCCAG-3’.
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9

Quantification of mcr-1 gene copy number and expression

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The copy numbers of plasmids and mcr-1 gene were measured by qPCR. The repA and reference rpoB genes were cloned into pHSG575 to generate pHSG575-repA and pHSG575-rpoB. Plasmids pHSG575-repA, pHSG575-rpoB and pHSG575-mcr-1 were used as template DNA with primers qrepA-F/qrepA-R, qrpoB-F/qrpoB-R and qmcr-1-F/qmcr-1-R, respectively, to establish the corresponding standard curve for determining the copy numbers, respectively. The genomic DNA of BW25113/pHNSHP45, BW25113/pHNSHP45ΔpcnR, and transposon mutants was extracted using HiPure Bacterial DNA Kit (Magen, China), and were used as template with primers described above to perform qPCR. Copy numbers of plasmids and mcr-1 per cell could be calculated as repA/rpoB and mcr-1/rpoB ratios, respectively.
Expression of mcr-1 was detected by real-time reverse transcription PCR (RT-qPCR). Total RNA was prepared as described in 5′RACE assay. Reverse transcription was performed on 1 μg total RNA using Goldenstar RT6 cDNA Synthesis Mix (TsingKe Biotech. China). Primers qmcr-1-F/qmcr-1-R were used to perform qPCR, and GAPDH expression level was used as internal control using primers GAPDH-F/GAPDH-R. Relative expression values were obtained by the 2–△△Ct method (26 ).
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10

Quantitative Real-Time PCR Gene Expression

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Total RNA was extracted by an RNAprep FastPure kit (TSP413, Tsingke) according to the manufacturer’s instructions. Goldenstar RT6 cDNA Synthesis Mix (TSK134S, Tsingke) was used to synthesize cDNA from the RNA. The reactions were performed using 2 × T5 Fast qPCR Mix (SYBR Green I) (TSE202, Tsingke). The sequences of the primers are listed in Supplemental Table 1. The GAPDH gene was used as a reference gene. Changes in gene expression are shown as fold changes compared with the gene expression level in the controls.
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