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166 protocols using sodium hydroxide (naoh)

1

Synthesis of Hydrogen Peroxide Bleaching Gel

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The 10 ml of 35% hydrogen peroxide (Wako Pure Chemical), 5 ml of deionized water, and 0.35 g of carboxymethyl cellulose sodium salt (Wako Pure Chemical) were mixed. The carboxymethyl cellulose sodium salt was used as thickener to increase the viscosity of bleaching gel. Then each of sodium hydroxide (NaOH, Wako Pure Chemical), sodium bicarbonate (NaHCO3, Wako Pure Chemical), sodium carbonate (Na2CO3, Wako Pure Chemical), potassium hydroxide (KOH, Wako Pure Chemical), potassium hydrogen carbonate (KHCO3, Wako Pure Chemical), or potassium carbonate (K2CO3,Wako Pure Chemical) was added as a pH conditioner, and pH of the solution was adjusted as 7.0 (Table 1). Final concentration of hydrogen peroxide in the bleaching materials was 23.0%.
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2

Reductive β-Elimination and Permethylation of Mucin

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AB-stained mucin bands were excised and subjected to reductive β-elimination, as described previously [12 (link), 13 (link)]. Briefly, the excised bands were incubated in 40 μL of 500 mM NaBH4 (191–11452; Fujifilm Wako Pure Chemical Corporation) in 50 mM NaOH (197–14891; Fujifilm Wako Pure Chemical Corporation) at 45°C for 16 h and the reaction was subsequently quenched by the addition of 8 μL of glacial acetic acid (017–00256; Fujifilm Wako Pure Chemical Corporation). The solutions were desalinated using a cation-exchange solid phase extraction cartridge (Oasis MCX, 60 mg; Waters Corporation, Milford, MA, USA) and concentrated and co-evaporated using 1% acetic acid in methanol to remove boric acid. The resulting residues were permethylated using iodomethane (137–02663; Fujifilm Wako Pure Chemical Corporation) and NaOH, desalinated, and dried as previously reported [12 (link), 13 (link)].
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3

Sensitive HPLC Quantification of Colistin and Netilmicin

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Analytical grade colistin sulfate, netilmicin sulfate, 9-fluorenylmethyl chloroformate (FMOC-Cl), trichloroacetic acid, sodium hydroxide, acetone, sodium hydrogen carbonate, and boric acid, and HPLC grade methanol, acetonitrile, tetrahydrofuran, and distilled water were purchased from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). The serum employed for quality control (QC) was purchased from Alfresa Pharma Corporation (Osaka, Japan).
Stock solutions of colistin sulfate (100 μg/mL) and netilmicin sulfate (5 μg/mL) internal standard were prepared by dissolving 1.0 and 0.05 mg of the respective substances in 10 mL of distilled water. A 100 mM FMOC-Cl stock solution was prepared by dissolving 258.7 mg of FMOC-Cl in 10 mL of acetonitrile. The carbonate buffer (1 wt%, pH 10) was prepared by dissolving the sodium hydrogen carbonate (1 g) in distilled water (100 mL) and the pH of the solution was adjusted to 10 using sodium hydroxide. All solutions were stable for at least 2months when stored in a refrigerator at 4 °C.
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4

Protocol for Preparing Ophthalmic Formulations

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Regorafenib, 4‐[4‐ ({[4‐Chloro‐3‐(trifluoromethyl) phenyl]carbamoyl}amino)‐3‐fluorophenoxy]‐N‐methylpyridine‐2‐carboxamide monohydrate, was purchased from Selleck Chemicals Co., Ltd. and Active Biochem, Ltd.. Pazopanib, 5‐[[4‐[(2,3‐dimethylindazol‐6‐yl)‐methylamino]pyrimidin‐2‐yl]amino]‐2‐methylbenzenesulfonamide hydrochloride was purchased from SYNKinase Co., Ltd. Hydroxypropyl cellulose, sodium dihydrogen phosphate, sodium chloride and sodium hydroxide were purchased from FUJIFILM Wako Pure Chemical Corporation (Osaka, Japan). Light liquid paraffin and benzalkonium chloride were purchased from NACALAI TESQUE, Inc (Kyoto, Japan). Polysorbate 80 and D‐mannitol were purchased from Junsei Chemical Co., Ltd. Captisol was purchased from Ligand Pharmaceuticals, Inc. Aflibercept (40 mg/mL EYLEA® Injection For Intravitreal Injection) was purchased from Bayer Yakuhin, Ltd. Mydrin‐P ophthalmic Solution was purchased from Santen Pharmaceutical Co., Ltd.. Scopisol solution was purchased from Senju Pharmaceutical Co., Ltd. (Osaka, Japan). Fluorescite Intravenous Injection 500 mg was purchased from Alcon Japan Ltd. (Tokyo, Japan).
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5

Synthesis of PDMA-γ-PDA Amphiphilic Copolymer

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Manganese(II)
chloride
tetrahydrate (MnCl2·4H2O, 99.99%) was purchased
from Sigma-Aldrich. N,N-Dimethylformamide
(DMF, 99.5%), sodium hydroxide (NaOH, 97.0%), ethanol (EtOH, 99.5%),
and chloroform (CH3Cl, 99.0%) were purchased from Wako.
All chemicals were used without further purifications. The amphiphilic
copolymer, PDMA-γ-PDA, was synthesized from N-(3,4-dihydroxyphenthyl)methacrylamide and N-dodecylacrylamide
by free radical polymerization.18 (link),26 (link)−29 (link)
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6

Volatile Standards Preparation and Characterization

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The volatile standards used in this study are shown in Additional File 4: Table S1. First, 2,4-dichloroaniline (99.5% purity) was purchased from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan) for the reagents. However, while n-heptyl β-D-glucopyranoside (98% purity) was purchased from Sigma-Aldrich, Inc. (St. Louis, MO, USA), dichloromethane (99.5% purity), liquid chromatography-mass spectrometry-grade methanol, citric acid, sodium phosphates, sodium fluoride (NaF), ascorbic acid, sodium hydroxide (NaOH) and 3-octanol (97% purity) were obtained from Wako Co. Ltd. (Osaka, Japan).
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7

Lipid Synthesis and Purification

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DPPC and DOPC were purchased
from Avanti Polar Lipid (Alabaster, AL). CTAB, sodium hydroxide,
and benzyl bromide were purchased from Wako Pure Chemicals (Osaka,
Japan). DDAB, TBAH, and DMGBE were purchased from Tokyo Chemical
Industries (Tokyo, Japan). All of these chemicals were used without
further purification.
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8

Physicochemical Characterization of SDZ and SMM

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SDZ was obtained from Sigma-Aldrich Corp. (St. Louis, MO, USA). The sodium salt of SMM was obtained from Meiji Seika Pharma Co., Ltd, Tokyo, Japan (Product name: Daimeton Soda). The
physicochemical properties of SDZ [6 (link)] and SMM are shown in Table 1Physical and chemical characteristics of sulfadiazine (SDZ) and sulfamonomethoxine (SMM). The partition coefficients for SMM was measured according to previous reported method [6 (link)]. Sodium Hydroxide was obtained from Fujifilm
Wako Pure Chemical Corp., Osaka, Japan. It was used to dissolve SDZ powder. For SMM, it was dissolved in sterilized distilled water before injection. All other solutions and chemicals used
in the present investigation were of HPLC or analytical grade.
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9

Medicinal Herb Extracts as LAB Growth Media

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The medicinal herbs were purchased from Kojima Kampo (Osaka, Japan) in their cut, dried forms. Twenty kinds of medicinal herbs were used in the present study, and the IDs of those are as follows: 1, Glycyrrhizae Radix (Glycyrrhiza glabra Linné); 2, leaves of Stevia rebaudiana; 3, Saussureae Radix; 4, roots of Glycyrrhiza uralensis Fisher; 5, Scutellariae Radix; 6, Armeniacae Semen; 7, Sesami Semen; 8, Lili Bulbus; 9, Epimedii Herba; 10, Cnidii Rhizoma; 11, Polygoni Multiflori Radix; 12, Eriobotryae Folium; 13, Rhei Rhizoma; 14, Artemisiae Folium; 15, Atractylodis Lanceae Rhizoma; 16, Moutan Cortex; 17, Paeoniae Radix; 18, Persicae Semen; 19, Gardeniae Fructus; and 20, Lycium Fructus. Small pieces of herbs were suspended in distilled water to a final concentration of 5% (w/v) and then heat-treated at 105 °C for 30 min. The herbal debris was removed from the extracts by centrifugation, and the obtained supernatants were adjusted to pH 7.0 by adding sodium hydroxide (FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan) solution. After sterilization at 120 °C for 20 min, the extracts were used as cultivation media of the LABs.
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10

Synthesis and Characterization of Calcium Phosphate Compounds

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Chemicals including calcium nitrate tetrahydrate (Ca(NO3)2·4H2O, 98%), calcium chloride (CaCl2, 95.0%), diammonium hydrogen phosphate ((NH4)2HPO4, 98%), sodium hydroxide (NaOH, 97%), phosphoric acid (H3PO4, 85% aqueous solution), ammonia solution (25% aqueous solution), and acetic acid (99.7%), were purchased from FUJIFILM Wako Pure Chemical Corp., Osaka, Japan. Pyromellitic acid (98.0%) was purchased from Tokyo Chemical Industry Co., Ltd., Tokyo, Japan. Furthermore, calcium carbonate (CaCO3 (calcite), 99.5%) and hydrochloric acid solution (HCl, 1.0 mol dm−3) were purchased from Nacalai Tesque Inc., Kyoto, Japan. All chemicals were used without further purification.
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