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Ultracut uct ultramicrotome

Manufactured by Leica
Sourced in Germany, United States, Austria, Switzerland, Japan, United Kingdom, Israel

The Ultracut UCT ultramicrotome is a laboratory equipment designed for the preparation of ultra-thin sections for electron microscopy. It is capable of cutting sections with a thickness range of 40 to 500 nanometers, allowing for high-resolution analysis of biological and materials science samples.

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317 protocols using ultracut uct ultramicrotome

1

Ultrastructural Analysis of Dorsal Rhizotomy

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Trimmed blocks were cut in an ultramicrotome (Leica Ultracut UCT Ultramicrotome), and semithin transverse sections (0.5 μm) were obtained and stained with 0.25% toluidine blue for light microscopy observation. Then, ultrathin transverse sections (70 nm) from the L4 to L6 segments were made in the same ultramicrotome (Leica Ultracut UCT Ultramicrotome), collected on formvar-coated single-slot grids, and then contrasted with uranyl acetate (2%) and lead citrate. Finally, the ultrathin transverse sections (70 nm) were examined under a Tecnai G2 Spirit BioTwin (FEI, Eindhoven, The Netherlands) transmission electron microscope, to evaluate structural and morphological changes in the microenvironment and adjacent areas 8 weeks after dorsal rhizotomy (chronic phase) and repair.
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2

Tissue Preparation for Microscopic Analysis

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Specimens were prepared according to the previously described procedures of Zdarska et al. (2001) (link). In short, skin samples were rinsed in saline, re-fixed in 2.5 % glutaraldehyde, and soaked in 0.1 M cacodylate buffer (pH 7.2) at 4°C overnight, fixed in 1 % osmium tetroxide at 4°C for 24 hours, dehydrated in an ethyl alcohol series (50 % to 100 %; each series took 24hrs.), then embedded in epoxy resin. Microtome sections of 500 – 100μm thickness were prepared using a Leica ultracut (UCT ultramicrotome). The thin sections were stained with toluidine blue (1X), then examined using a Leica camera (ICC50HD). Ultrathin sections of approximately 75 – 90nm thickness were prepared and stained with uranyl acetate and lead citrate, then examined by transmission electron microscope (JEOL, JEM-1400 TEM) at the College of Agriculture, Cairo University.
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3

Ultrastructural Analysis of Mouse Tissues

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EM was performed on mouse tissues fixed overnight at 4 °C with 2% glutaraldehyde in 0.1 M cacodylate buffer (pH 7.4) and washed with cacodylate buffer three times. The tissues were fixed with 2% OsO4 for 2 h, washed again with 0.1 M cacodylate buffer three times, washed with water, and placed in 1% uranyl acetate for 1 hour. The tissues were subsequently serially dehydrated in ethanol and propylene oxide and embedded in EMBed 812 resin (Electron Electron Microscopy Sciences). Thin sections, ~80 nm thick, were obtained by using the Leica ultracut-UCT ultramicrotome (Leica) and placed onto 300-mesh copper grids and stained with saturated uranyl acetate in 50% methanol and then with lead citrate. The grids were viewed in the JEM-1200EXII electron microscope (JEOL) at 80 kV, and images were recorded on the XR611M, mid-mounted, 10.5 million pixel, CCD camera (Advanced MicroscopyTechniques).
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4

Ultrastructural analysis of brain regions

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Hippocampi and prefrontal cortices sections (1 mm3) were fixed at 4°C (2.5% glutaraldehyde and 1% paraformaldehyde in 0.1M cacodylate buffer) for 48 h and washed three times with cacodylate buffer. Hippocampus and prefrontal cortex sections were then fixed with 1% osmium tetroxide for two hours, washed with 0.1M cacodylate buffer. Tissues were quickly rinsed with water and placed in 1% uranyl acetate for one hour. Samples were then dehydrated in ethanol and propylene oxide and embedded in EMBed 812 resin (Electron Microscopy Sciences, Hatfield, PA, USA). Tissue sections (approximately 80 nm) were made using the Leica ultracut-UCT ultramicrotome (Leica, Deerfield, IL, USA), placed onto copper grids, and stained with saturated uranyl acetate in 50% methanol and with lead citrate. Grids were examined with a JEM-1200EXII electron microscope (JEOL Ltd, Tokyo, Japan) at 80kV and images recorded with the XR611M, mid mounted, 10.5M pixel, charge-coupled device camera (Advanced Microscopy Techniques Corp, Danvers, MA, USA). Pathologists (MMQ, IH-S), unaware of animals genotypes examined the images.
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5

Ultrastructural Analysis of Scalp Specimens

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The scalp specimen was trimmed into a small piece (approximately 1 mm3) and was fixed in 2.5% glutaraldehyde (buffered to pH 7.3 with sodium cacodylate) for 4 h at 4 °C, and then was washed with 0.1 mol/L cacodylate buffer. The specimen was post-fixed in 1% osmium tetroxide in 0.1 mol/L cacodylate buffer at a pH of 7.3 for 1 h. Sequentially, the specimen was dehydrated using ethanol at concentrations of 30%, 50%, 70%, 80%, 90% and 100%, each phase for 10 min. This was followed by overnight impregnation with propylene and epoxyresin (Epon 812). Ultrathin sections (70 nm thick) were obtained using a Leica Ultracut UCT ultramicrotome (EM UC6, Leica, Wetzlar, Germany). These sections were placed onto a copper grid and stained with lead and uranyl solutions, after which they were observed and photographed using a TEM (JEM-2100, JEOL, Tokyo, Japan).
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6

Ultrastructural Analysis of Vc/C2 in CCI-ION Rats

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CCI-ION and sham rats were perfused with 2% paraformaldehyde/2% glutaraldehyde (pH 7.4) three-weeks post CCI-ION, which correlates with orofacial hypersensitivity in the injury side of CCI-ION rats (Li et al., 2014 (link)). The Vc/C2 was isolated, rinsed in 0.1M sodium cacodylate buffer (pH 7.4), and post-fixed in 1% osmium tetroxide in 0.1M sodium cacodylate buffer for 1 hour, dehydrated in increasing serial dilutions of ethanol (70%, 85%, 95%, 100%) for 10 min each, incubated in propylene oxide for 1 hour, incubated in propylene oxide/Spurr’s resin (1:1) for 1 hour, and then embedded in Spurr’s resin overnight. Ultrathin sections (~60nm thickness) were cut by a researcher blinded to the surgery procedures and behavioral outcomes using a Leica Ultracut UCT ultramicrotome (Leica, Vienna, Austria), mounted on copper grids, stained with uranyl acetate and lead citrate. Images of the Vc/C2 were viewed on a JEOL 1400 transmission electron microscope (JEOL, Tokyo, Japan) and images were captured using a Gatan Digital camera (Gatan, Pleasanton, CA, USA).
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7

Mouse Liver Ultrastructural Analysis

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Mouse livers (1 mm3) were fixed overnight at 40C in 2% glutaraldehyde in 0.1M cacodylate buffer (pH 7.4) and washed with cacodylate buffer three times. The tissues were fixed with 2% OsO4 for two hours, washed again with 0.1M cacodylate buffer three times, washed with water and placed in 1% uranyl acetate for one hour. The tissues were subsequently serially dehydrated in ethanol and propylene oxide and embedded in EMBed 812 resin (Electron Microscopy Sciences, Hatfield, PA, USA). Thin sections, approx. 80 nm, were obtained by utilizing the Leica ultracut-UCT ultramicrotome (Leica, Deerfield, IL, USA) and placed onto 300 mesh copper grids and stained with saturated uranyl acetate in 50% methanol and then with lead citrate. The grids were viewed in the JEM-1200EXII electron microscope (JEOL Ltd, Tokyo, Japan) at 80kV and images were recorded on the XR611M, mid mounted, 10.5Mpixel, CCD camera (Advanced Microscopy Techniques Corp, Danvers, MA, USA).
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8

Cardiomyocyte Ultrastructural Analysis

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Cardiomyocytes seeded in p35 plates with Matrigel® and RPMI/B27 containing insulin, 10% FBS and 10 µM Y27632 were fixed with 4% paraformaldehyde and 2% glutaraldehyde in 0.1 M phosphate buffer pH 7.4 for 2 h at room temperature. Fixed cells were included in epoxy resin (TAAB 812 resin, TAAB laboratories, Berkshire, England) by conventional methods. For this, cells were stained for 1 h with 1% osmium tetroxid + 0.08% potassium ferricianide at 4 °C and with 2% uranyl acetate in water for another hour at 4 °C. Dehydration (EtOH: 50%, 75%, 90%, 95% and 100%) was carried out at 4 °C and embedded with the resin (epoxy resin: EtOH 1:2, 1:1, 2:1, and 100% resin) at room temperature. Finally, the resin was polymerized for 48 h at 60 °C. Ultrathin 70 nm cuts were obtained on a Leica Ultracut UCT ultramicrotome (Leica, Vienna, Austria) with a DiATOME diamond blade. Sections were collected on hexagonal drawing Cu/Pd grids, and 100 windows per square inch (200 mesh) were coated with formvar and a layer of evaporated carbon. The sections were stained with 2% uranyl acetate in water for 7 min and with Reynolds lead citrate for 3 min. About 100 images from each sample were taken with a 4 K × 4 K, F416 CMOS camera from TVIPS (Gauting, Germany) at 5000× or 8000× magnification on the JEOL JEM-1010 electron microscope (JEOL, Akishima, Tokyo, Japan) at an electron acceleration voltage of 80 kV.
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9

Transmission Electron Microscopy of Mitochondria

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Transmission electron microscopy (TEM) was performed as previously described [16 (link)]. Immediately after excision, LV samples were fixed in 4% formahaldehyde: 1% glutaraldehyde in cacodylate buffer, and postfixed in 1% osmium tetroxide. Tissues were then washed in PBS, dehydrated through graded alcohols followed by acetone, and then infiltrated with Durcupan ACM Fluka resin and polymerized at 60 °C for 48 h. Blocks were cut with a Leica ultracut UCT ultramicrotome (Leica, Heerbrugg, Switzerland), and Sects. (60–70 nm) were mounted onto 200-mesh grids. Sections were stained with a 2% solution of aqueous uranyl acetate for 10 min, followed by lead citrate staining for 10 min. Stained sections were viewed with a JEOL JEM-1010 transmission electron microscope (Tokyo, Japan) operating at 80 kV through 6000 × , 10,000 × , and 40,000 × objectives. Images were acquired with a GATAN Orius 200SC digital camera. Mitochondrial morphometry was analyzed using ImageJ (National Institutes of Health).
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10

Cell Membrane Integrity Analysis by TEM

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Cell membrane integrity was evaluated by transmission electron microscopy (TEM) analysis. Briefly, cells subjected to different treatments (BP, HP, HP-ES, and ES) were centrifuged and collected after washing twice with PBS buffer (0.01 M, pH 7.0). In total, 1 mL 2.5% glutaraldehyde was added to fix cells for 3 h at room temperature before being washed twice with PBS buffer (0.01 M, pH 7.0). Subsequently, the cells were washed, dehydrated, and embedded. Finally, ultrathin sections (70–80 nm) obtained by a Leica Ultracut UCT ultramicrotome (Leica) were captured using an electron microscope (JEM-1400, Japan) at room temperature.
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