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4 protocols using anti β tubulin cy3

1

Immunofluorescence Imaging of Protein Localization in Cells

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HeLa cells were seeded on coverslips and transfected with plasmids. After 48 h, cells were fixed with 4% formaldehyde, and incubated with anti-HA (Santa Cruz Biotechnology) or anti-Myc (Santa Cruz Biotechnology) antibody, followed by secondary goat anti-rabbit antibody coupled to Alexa488 (Invitrogen) and goat anti-mouse antibody coupled to Alexa546 (Invitrogen). The nucleus was stained with DAPI (Invitrogen). Coverslips were mounted and fluorescence was visualized with 40× magnification on a confocal laser scanning microscope (Carl Zeiss, Inc.), and pictures were analyzed with the ZEN 2009 software.
To count cells with mitotic defects, HeLa cells grown on coverslips were transfected with the indicated siRNA and plasmids for subsequent rescue. After fixation and permeabilization, cells were stained with monoclonal anti-β-tubulin-Cy3™ (Sigma) for 2 h, and the nucleus was counterstained with DAPI. Cells with mitotic defects were counted at 40× magnification with a fluorescence microscope (Nikon eclipse TE 2000-U).
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2

Immunofluorescence Staining of Airway Epithelial Cells

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Fixed HAE cultures were permeabilized in 0.1% Triton X-100 for 1 h, followed by blocking for 30 min in 1% BSA in PBS. Rabbit anti-MUC5B (sc-20119; Santa Cruz) and mouse anti-RSV-G (clone 021/19G) (46 (link)) were incubated for 2 h, followed by 1 h of incubation with donkey anti-rabbit IgG–Cy5 (711-175-152; Jackson) and donkey anti-mouse IgG–A488 (A21202; Life Technologies) and a final incubation for 1 h with anti-β-tubulin–Cy3 (C4585; Sigma). The inserts were embedded in VectaShield with 4′,6-diamidino-2-phenylindole (DAPI; H-1500; Vector Laboratories). Pictures were obtained using a Leica SP8 confocal microscope. Maxi-projection was performed on the z-stack planes.
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3

Cytoskeletal Dynamics in Simulated Microgravity

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Cells were seeded to proliferate for 24 hrs on sterile cover slips.
The cover slips were then mounted on the simulating microgravity machine for
another 24 hrs. Fluorescein isothiocyanate labeled Phalloidin
(Sigma, P5282) was used to visualize actin filaments. The staining procedure
started immediately after each s-μg experiment. After several times
rinsing with phosphate buffered saline (PBS), the cells were fixed with 3.7%
paraformaldehyde (dissolved in PBS buffer) for 5 min. Upon
permeabilizing cells with 0.1% Triton-X100 in PBS and washing again in PBS, they
were stained with a 50 mg/ml fluorescent phalloidin conjugate
solution in PBS for 40 min at room temperature. Before staining for
microtubules, samples were washed several times with PBS to remove unbound
phalloidin conjugate. Detection and localization of microtubules were performed
using monoclonal Anti-β-Tubulin-Cy3 (Sigma, C4585). Diluted antibody
conjugate in PBS containing 1% BSA was added to cover cell layer and incubated
for 60 min. Upon 3 times washing of the cells with PBS,
5 minutes each, samples were left to dry. Images were captured with
an invert fluorescent microscope (Olympus, BX51 equipped with DP72 camera) and
processed with ImageJ software.
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4

Immunofluorescence for MBR Analysis

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Cells were seeded onto poly-L-lysine–coated coverslips, fixed in 2% formaldehyde or in ice-cold methanol, permeabilized in 0.25% Triton X-100 in PBS for 10 min, and then blocked in 5% bovine serum albumin in PBS for 1 h before the primary antibody (Ab) was applied. Employed Abs were as follows: anti-ALIX (1:100; #sc-53538; Santa Cruz Biotechnology), anti-CEP55 (1:700; # 00055165-A01; Bionova); anti–β-tubulin-Cy3 (Sigma–Aldrich), secondary 488- or 594-conjugated Abs (1:300; Alexa-Flour, Life Technologies). DAPI (Sigma–Aldrich) was used to stain DNA. Cells were examined under an upright Olympus BX53 microscope equipped with a Lumen 200 Fluorescence Illumination System (Prior Scientific) with a 200-W metal arc lamp, and photographs were taken (× 100 or × 60 objectives) using a cooled camera device (ProgRes MF). Images for each sample were taken selecting the appropriate Olympus filters (DAPI: U-MNU2; FITC: U-MNB2; Texas red: U-MWIY2) at 100% of excitation light intensity with different exposure time for tubulin, CEP55, ALIX, and DAPI, respectively, of 500, 640, 1,264, and 16 ms. For MBR quantification, because CEP55 and ALIX also label centrosome, bonafide MBRs were considered only those clearly showing costaining of CEP55 or ALIX with β-tubulin that is strongly enriched in this subcompartment.
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