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7 protocols using anti cd8α clone 53 6

1

Flow Cytometric Analysis of Immune Cell Markers

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For staining surface markers, cells were washed and blocked in FACS buffer (PBS plus 1% FCS) in the presence of Fc block. Samples were stained with anti-CD8α (clone 53–6.7, BioLegend), anti-CD25 (clone 7D4, eBioscience), anti-CD62L (clone MEL-14, eBioscience), anti-CD69 (clone H1.2F3, eBioscience), anti-Vα2 (clone B20.1, BD Biosciences), anti-CD244 (clone C9.1, BD Biosciences), anti-Ly108 (clone 13G3, BD Biosciences), or anti-CD27 (clone LG.3A10, BioLegend), at 4 C for 30 minutes in FACS buffer, protected from light, followed by fixation with 4% paraformaldehyde (PFA, Electron Microscopy Sciences). For intracellular staining, cells were fixed and permeabilized with BD Cytofix/Cytoperm (BD Biosciences) at 4 C for one hour. Samples were then stained with anti-granzyme B (clone GB11, BD Biosciences) for one hour at 4 C, protected from light. For phospho-antibody staining, cells were fixed with 4% paraformaldehyde, methanol-permeabilized at −20 C, and stained for 60 minutes at 4 C with anti-phosphoS6 (clone D57.2.2E, Cell Signaling) in PBS plus 1% Triton X-100 and 0.5% bovine serum albumin (BSA). Data were acquired on either a Calibur1 or LSRII flow cytometer (BD) and analyzed using FlowJo software (Tree Star).
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2

Splenocyte Proliferation Assay

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To evaluate the proliferative capacity of cells, splenocytes were stained with 1μM Cell Trace Violet (CTV, Life Technologies) in PBS at 37 C for 10 minutes. Stained cells were washed 3 times with complete media and then stimulated in the presence of OVA257-264. Cells were collected at indicated time points, stained with anti-CD8α (clone 53–6.7, BioLegend) and evaluated via flow cytometry.
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3

Measuring CD8+ T Cell Degranulation

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For degranulation assays (30 (link)), activated CTLs were stimulated in plates coated with anti-CD3ε (BioXCell) or mixed at a 1:1 ratio with peptide-pulsed or non-pulsed targets at 37°C in the presence of anti-CD107a-PE-labeled antibody (clone 1D4B, BioLegend). Upon degranulation, CD107a is exposed on the cell surface, allowing binding and subsequent internalization of the anti-CD107a-PE. At indicated time points, plates were placed on ice and cells transferred into cold PBS, stained with anti-CD8α (clone 53–6.7, BioLegend) antibody, and analyzed via flow cytometry. For analysis, the percent of PE+ cells in the CD8+ gate indicates cells that have degranulated, having been exposed to anti-CD107a during the assay.
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4

Flow Cytometry Antibody Panel for Immune Cell Profiling

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Antibodies to following antigens were used for flow cytometry: anti-CD4 (clone RM4-5, Biolegend #100536), anti-CD5 (clone 53-7-3, Biolegend #100627, #100625), anti-CD8α (clone 53-6.7, Biolegend #100738), anti-CD24 (clone M1/69, Biolegend #101806), anti-CD25 (clone PC61, Biolegend #102016 and #102036), anti-CD44 (clone IM7, Biolegend #103049), anti-CD45.1 (clone A20, Biolegend #110723), anti-CD45.2 (clone 104, Biolegend #109808), anti-CD49d (clone R1-2, Biolegend #103618), anti-CD127 (clone A7R34, Biolegend #135012), anti-TCRβ (clone H57-597, Biolegend #109218), anti-KLRG1 (clone 2F1, Biolegend #138421), anti-Ly6C (clone HK1.4, Biolegend #128006), biotin-conjugated anti-BST2 (clone 927, Biolegend #127006), anti-biotin (clone 1D4-C5, Biolegend #409004). Viability was stained with LIVE/DEAD™ Fixable Near-IR Dead Cell Stain Kit (Invitrogen #L34975), Zombie Green™ Fixable Viability Kit (Biolegend, #423111) or Hoechst 33258 (Invitrogen, #H3569). For the analysis of Jurkat cell lines, anti-CD8 (clone MEM-31, Exbio #1P-207-T025), anti-CD69 (clone FN50, Exbio #T7-552-T100) were used. Antibodies were conjugated with various fluorophores and used according to the manufacturer’s instructions.
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5

Multiparameter Immune Profiling of Mice

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Whole lung, spleen, or peripheral blood from immunized mice was collected after the indicated time points. The lung and spleen were digested with collagenase type IV (Worthington) at a concentration of 1 mg/mL for 20 min at a temperature of 37 °C, and then passed through a 100-μm strainer to obtain a single-cell suspension. Red blood cells were lysed before staining. Single-cell samples were then stained with Zombie Yellow (BUV570, BioLegend 423103), anti-CD3 (clone 145-2C11, BioLegend), anti-CD8α (clone 53-6.7, BioLegend), anti-CD4 (clone RM4-5, BioLegend), anti-CD44 (clone IM7, BioLegend), anti-CD45 (clone 30-F11, BioLegend), anti-CD69 (clone H1.2F3, BioLegend), anti-CD103 (clone 2E7, BioLegend), and Ova-specific tetramer (residues 257 to 264). The MHC class I tetramers used in this study (H-2K(b)-SIINFEKL and H-2D(b)-ASNENMETM) were kindly provided by the NIH Tetramer Core Facility. Cells were analyzed with an LSRII.UV analyzer at the Stanford Shared FACS Facility.
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6

Cre-mediated Recombination in Murine Splenocytes

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Female Ai14 mice were purchased from Jackson Laboratory and housed in the Laboratory Animal Facility of the Stanford University Medical Center. CARTs were complexed with 15 μg Cre mRNA (Trilink L-7211) in PBS 5.5 to a total volume of 100 μl at 10:1 N:P ratio, with the same formulation procedure described above. Spleens were isolated 48 h after transfection to measure Cre-mediated recombination. Spleens were smashed with a 100-μm strainer to make a single-cell suspension. Red blood cells were lysed before staining. Single-cell samples were then stained with Zombie NIR (BUV570, BioLegend 423103), anti-CD45 (clone 145-2C11, BioLegend, 1:300 dilution), anti-CD8α (clone 53-6.7, BioLegend, 1:200 dilution), anti-CD4 (clone RM4-5, BioLegend, 1:200 dilution), anti-CD11c (clone IM7, BioLegend, 1:400 dilution), anti-CD19 (clone 30-F11, BioLegend, 1:200 dilution), and anti-F4/80 (clone H1.2F3, BioLegend, 1:100 dilution). Cells were then washed twice and analyzed by flow cytometry. Data were collected on an Attune Nxt Flow Cytometer.
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7

Cell-specific mRNA Delivery Analysis

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To determine the cell specificity of mRNA delivery with CART, mice were injected with 7.5 µg of Cy5-labeled mRNA encoding luciferase. After 2 h, spleens were isolated and processed into a single-cell suspension, followed by red blood cell lysis. Single-cell suspensions were stained with Zombie NIR (BUV570, BioLegend 423103) to exclude dead cells and labeled with antibodies against various cell surface markers: anti-CD45 (clone 145-2C11, BioLegend, 1:300 dilution) for total leukocytes, anti-CD8α (clone 53-6.7, BioLegend, 1:200 dilution) for CD8 + T cells, anti-CD4 (clone RM4-5, BioLegend, 1:200 dilution) for CD4 + T cells, anti-CD11c (clone IM7, BioLegend, 1:400 dilution) for dendritic cells, anti-CD19 (clone 30-F11, BioLegend, 1:200 dilution) for B cells, and anti-F4/80 (clone H1.2F3, BioLegend) for macrophages. After staining, cells were washed twice and subjected to flow cytometry analysis. Data acquisition was performed using an Attune Nxt Flow Cytometer. The percentage of Cy5+ cells per cell type was then calculated.
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