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32 protocols using ssea4

1

Characterizing hiPSCs by Stemness Markers

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The hiPSCs were continuously subcultured for more than 30 passages on hUC-MSCs feeder and characterized by immunocytochemistry with stemness-related fluorescence-labeled antibodies, which were OCT4 (octamer-binding transcription factor 4), SOX2 (SRY related HMG box-2), NANOG, SSEA4 (stage-specific embry-onic antigen-4) and TRA-1-60 (Abcam, UK). The nuclei were visualized by staining with DAPI (4’,6-Diamidine-2’-phenylindole dihydrochloride) (Roche, USA).
The hiPSCs were cultured on sterile cover glass in 24-well plates (Nunc, Denmark) with the hUC-MSCs feeder. After 2–3 days of following passage, growing hiPSCs on the feeder were washed with PBS and fixed in 4% paraformaldehyde (Boster, China), then the cells were incubated with the following antibodies: OCT4, SOX2, NANOG, SSEA4 and TRA-1-60 (Abcam, UK), and stained according to manufacturer’s protocol. The stained cells were imaged with an inverted fluorescence microscope (ix71; Olympus, Japan).
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2

Immunofluorescence Staining of Stem Cells

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Cells were were fixed in 4% paraformaldehyde (PFA) for 15 min, permeabilized with 0.1% Triton X-100 for 30 min, and then incubated with blocking solution (PBS + 1% BSA) at 4°C for 30 min followed by primary antibodies at 4°C overnight. Primary antibodies were diluted in Immnol Fluorence Staining Primary Antibody Dilution Solution (Beyotime, P0108) at the followings ratios: OCT4 (rabbit polyclonal antibody, 1:500, Abcam), SOX2 (rabbit polyclonal antibody, 1:500, Abcam), NANOG (rabbit polyclonal antibody, 1:500, Abcam), SSEA4 (rabbit polyclonal antibody, 1:500, Abcam), CD105 (rabbit monoclonal antibody, 1:500, Abcam), β-Ⅲ-tubulin (rabbit monoclonal antibody, 1:500, Chemicon), AFP (mouse monoclonal antibody, 1:500, Chemicon), Desmin (mouse polyclonal antibody, 1:500, Abcam), Nestin (rabbit monoclonal antibody, 1:200, Chemicon), PDX1 (rabbit monoclonal antibody, 1:500, Chemicon) and α-actin (rabbit monoclonal antibody, 1:200, Sigma). After washing three times with PBS, cells were incubated with Alexa Fluor 488 (donkey anti-mouse) or Alexa Fluor 546 (goat anti-rabbit) conjugated secondary antibody (1:500; Chemicon) for 1h at room temperature in the dark. Finally, DNA was stained with Hoechst33342 (Beyotime, C1005) for 3 min. Negative controls were processed the same way, except that the primary antibodies were replaced with blocking buffer.
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3

Immunocytochemical Analysis of Stem Cells

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To perform immunocytochemical analysis, the cells were washed twice with PBS and fixed with 4% PFA (pH 7.4) for 30 min at room temperature. Fixed cells were washed three times with PBS and were subsequently incubated with PBS containing 0.3% Triton X-100 for 1 h; then, they were blocked with FBS-BSA-blotting buffer (10% FBS, 3% BSA, and 0.3% Triton X-100) for 1 h. Then, immunostaining was performed according to standard protocols using the following primary antibodies: Oct-3/4 (R&D); SOX2 (R&D); SSEA4 (Abcam); and TRA-1-60 (Cell Signaling). Appropriate Alexa Fluor dye-conjugated secondary antibodies (Invitrogen) were used. Nuclei were stained with DAPI (Life Technologies). Images were taken using a confocal microscope (Nikon).
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4

Immunofluorescence Staining of Stem Cells

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Cells were fixed in 4% paraformaldehyde/PBS for 15 min at room temperature and permeabilized with 1% Triton X-100/PBS (Sigma) for 10 min. After blocking with 10% donkey serum in PBS (Jackson ImmunoResearch) for 1 h at room temperature, cells were incubated with primary antibodies overnight at 4 °C, followed by incubation with appropriate fluorescent-conjugated secondary antibodies for 1 h at room temperature the next day. Primary antibodies were as follows: OCT4 (Abcam), SOX2 (Abcam), SSEA4 (Abcam), TFAP2C (Santa Cruz), PRDM14 (Abcam), and NANOS3 (Abcam). Secondary antibodies were as follows: AlexaFluor 488 conjugated donkey anti-rabbit IgG and AlexaFluor 594 conjugated donkey anti-mouse IgG (all Life Technologies). The nuclei were counterstained with DAPI (Thermo Fisher Scientific). The cells were observed with a Zeiss inverted confocal microscope.
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5

Immunocytochemistry Characterization of Stem Cells

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The cells in the culture dish were fixed in 4% paraformaldehyde for 15 min, then permeabilized with 0.5% Triton X-100 for 5 min, and blocked with 10% bovine serum albumin (BSA). Next, the cells were incubated with specific primary antibodies overnight at 4 °C and then incubated with secondary antibodies in 10% BSA. Nuclei were counterstained with DAPI for 5 min. Images were acquired with a fluorescence microscope (Olympus, IX73, Japan). The primary anti-stem cell markers were Map2 (Millipore), NANOG (Cell Signaling Technology), Nestin, Pax6, SSEA4 (Abcam, Massachusetts, USA), and PSD95 (Invitrogen, Massachusetts, USA).
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6

Characterization of FTEC Surface Markers

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Surface molecules of the FTEC cultures on passage 3 were characterized using flow cytometry. Three FTEC cell lines were enrolled for testing. Cells were detached using 2 mM EDTA in PBS, washed with PBS containing 2% bovine serum albumin and 0.1% sodium azide (Sigma, Saint Louis, MO, United States), and incubated with their respective antibody conjugated with fluorescein isothiocyanate (FITC) or phycoerythrin (PE). The FTE stem cell marker Lgr5 (GeneTex, Irvine, CA, United States) and the embryonic stem cell markers SSEA3 (eBioscience, ThermoFisher, Waltham, MA, USA) and SSEA4 (Abcam, Cambridge, England) were used for identification of the FTECs. Cells were analyzed using a flow cytometer (Becton Dickinson, San Jose, CA, United States).
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7

Pluripotent Stem Cell Differentiation Protocol

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The main reagents include DMEM/F12 (1:1) medium, knockout serum replacement (KSR), valproic acid, fetal bovine serum, Essential 8™ Flex Medium, Geltrex™, KSFM medium, BMP‐4, bovine pituitary extract (BPE), (Gibco), NANOG, OCT4, SOX2, SSEA‐4, TRA‐1‐81, TRA‐1‐60, Krt19, Integrinβ1, CD200, CD31 and VEGF‐A antibodies (Abcam), PDGF‐B and Ang2 antibodies (Santa Cruz), recombinant human EGF (R&D), RA, valproic acid, sodium alginate (Sigma), Matrigel® Matrix (Corning), mTeSRTM1 medium (Stem Cell), Astragalus polysaccharide (Solarbio), silk fibroin and collagen (Hefei Bomei Bio), and Dextran Texas red™ (Invitrogen). Primers were designed using Primier 6.0 software, and all primers were synthesized as shown in Table 1.
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8

Pluripotent Stem Cell and Cardiomyocyte Immunostaining

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Cells were fixed in 4% paraformaldehyde and permeabilized with 0.05% Triton-X100 followed by goat serum blocking. H7 and hiPSC colonies were stained with pluripotency marker antibodies OCT3/4 (Santa Cruz), SOX2 (Abcam), Nanog (Santa Cruz), and SSEA-4 (Abcam), whereas hPSC-derived cardiomyocytes were stained with antibodies for cTNT (Abcam), Sarcomeric α-actinin (Abcam), MYL2 (Proteintech), MYL7 (Synaptic system), or EGFP (Proteintech) for 24 h at 4 °C respectively. Cells were then incubated with Alexa Fluor 594 or 488 at 37 °C for 1 h and subsequently counterstained with DAPI. For rat hearts, heart tissues were paraffin-embedded and sectioned, followed by H&E staining. The remaining tissues were embedded with optimal cutting temperature compound (OCT; Sakura Finetek, Japan) and sectioned into sections 8 mm thick. The slides were then labeled with antibodies for Laminin (Thermo Fisher Scientific), fibronectin (Abcam), and collagen III (Abcam). Images were captured with a fluorescence microscope Leica DMi8 (Leica).
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9

Immunofluorescence Characterization of Stem Cell Markers

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The cultured cells were placed on 12 mm cover slips, fixed in 4% paraformaldehyde (PFA; Sigma) for 10 min at room temperature, washed three times with phosphate-buffered saline (PBS, Geno, China), and treated with a permeabilizing and blocking buffer (10% donkey serum, 0.225% Triton X-100) for 1 hour at room temperature. Then, the cells were incubated with the following primary antibodies: OCT4 (1 : 200, Abcam), Nanog (1 : 250, Abcam), SSEA4 (1 : 250, Abcam), TRA-1-60 (1 : 300, Abcam), SOX1 (1 : 300, Boster), SOX2 (1 : 300, Boster), Nestin (1 : 300, Abcam), Olig2 (1 : 500, Millipore), Pax6 (1 : 100, DSHB), HB9 (1 : 50, DSHB), Islet1 (1 : 250, Abcam), ChAT (1 : 100, Millipore), and TuJ1 (1 : 250, Abcam). All antibodies were diluted in antibody dilution buffer (2% donkey serum, 0.05%Triton X-100), and the cells were incubated with the antibodies overnight at 4°C. After three washing steps, the cells were incubated for 1 hour at room temperature with secondary antibodies: Alexa Fluor (488 or 555) donkey anti-mouse, donkey anti-rabbit, and donkey anti-goat. For the detection of AChR, the cocultured cells were incubated with Alexa Fluor 555-conjugated α-BTX (1 μg/ml, Invitrogen) for 1 hour at 37°C before fixation. The cells were then washed 2 times in PBS and fixed with 4% PFA. All cell samples were observed using an Olympus fluorescence microscope.
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10

Immunostaining Analysis of Stem Cell Markers

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Immunostaining analysis was performed as follows: cells growing on cover slips were
washed with phosphate buffered saline (PBS) and fixed with 4% paraformaldehyde for 10 min
at room temperature (RT). Cells were permeabilized with 0.1% Triton X-100 and blocked with
2% BSA in Dulbecco's phosphate buffered saline, then incubated with primary antibodies for
octamer-binding transcription factor-4 (OCT4, Abcam, Cambridge, UK), NANOG (Abcam), SOX2
(Abcam), Calnexin (Cell Signaling Technology, Danvers, USA), and ENG (Santa Cruz
Biotechnology, Dallas, TX, USA) overnight at 4 ℃. For cell surface antigens staining,
primary antibodies for SSEA4 (Abcam), CD31 (Abcam), CD144 (Cell Signaling Technology), and
ENG were applied on fixed cells overnight at 4 ℃ after blocking. After washing, cells were
treated with AlexaFluor 488 or AlexaFluor 594 conjugated secondary antibody (Life
Technologies, Carlsbad, CA, USA) for 1 h in the dark at RT. For F-actin staining, cells
were washed and fixed, then treated with Phalloidin-fluoresceine isothiocyanate (FITC,
Yeasen, Shanghai, China) for 30 min at RT. Nuclei were stained with DAPI (Sigma). Images
were photographed by light microscopy (Nikon Eclipse Ti-S, Japan) and captured using
NIS-Elements BR 4.30.01 software.
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