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11 protocols using eclipse c1 fluorescence microscope

1

Immunofluorescence Analysis of Integrin Expression

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Experiments were performed on 4-μm paraffin-embedded tumor tissues mounted on slides. Paraffin was removed, and the sections were serially rehydrated by descending ethanol series as described above. Antigen retrieval was performed by heating the slides in EDTA buffer at 100°C for 15 min. Slides were blocked by incubating with 3% BSA (Wuhan Servicebio Technology Co., Ltd.) for 30 min at 37°C and then incubated with primary antibodies against FAM83A (1:500; BIOSS), integrin α1 (1:200; ProteinTech Group, Inc.), integrin α3 (1:1,000; ProteinTech Group, Inc.), integrin α5 (1:100; Hangzhou HuaAn Biotechnology Co., Ltd.), integrin β4 (1:100; ProteinTech Group, Inc.) and integrin β5 (1:100; BIOSS) at 4°C overnight, followed by the secondary antibodies Alexa Fluor 488-conjugated goat anti-mouse (1:400; cat. no. GB25303) or Cy-3-conjugated goat anti-rabbit (1:300; cat. no. GB21303; both from Wuhan Servicebio Technology Co., Ltd.) for 1 h at room temperature. The cell nuclei were stained with DAPI. Nikon Eclipse C1 fluorescence microscope with an integrated camera was used to visualize the fluorescence and acquire images from five representative fields of each sections (×400).
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2

TUNEL Assay for Apoptotic Cells

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Apoptotic cells in the brains were identified via the terminal deoxynucleotidyl transferase-mediated dUTP nick-end labeling (TUNEL) assay using the in situ Cell Death Detection Kit (Roche, Germany) according to the manufacturer's protocol. Briefly, the brain sections were deparaffinized before rehydration with decreasing concentrations of ethanol. Subsequently, the sections were washed with PBS pH 7.4 and then covered with proteinase K solution for 25 min. Thereafter, the sections were washed with PBS again, covered with the TUNEL reaction mixture, and incubated for 1 h in the dark. DAPI counterstaining of nuclei was followed by a final PBS wash. Florescence micrographs were obtained using a Nikon Eclipse C1 fluorescence microscope (Nikon, Japan) and analyzed using CaseViewer software. The number of TUNEL-positive cells were counted under 400-fold magnification. Cell counting was performed by an investigator blinded to the groups.
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3

Immunofluorescence Analysis of Intestinal Tight Junctions

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The 5-µm-thick paraffin-embedded jejunal and ileal tissue sections were used for immunofluorescence. Heat-induced antigen retrieval was performed by autoclaving the sections for 10 minutes at 121°C in 10mM sodium citrate buffer (pH 6.0). The sections were blocked with 8% skim milk in TBST at 37°C for 40 minutes, and then immunostained using primary antibodies against ZO-1 (1:200, GB11195, rabbit; Servicebio), occludin (1:200, GB111401, rabbit; Servicebio), claudin-1 (1:200, GB11032, rabbit; Servicebio) at 4°C overnight. The sections were washed and incubated with secondary fluorescent antibodies at 37°C for 60 minutes. The secondary antibodies was CY3 goat anti-rabbit IgG (1:300; GB21303; Servicebio). Sections were mounted with Nikon DS-U3 with DAPI (G1012, Servicebio). Images were captured with an Nikon Eclipse C1 fluorescence microscope (Nikon, Tokyo, Japan).
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4

Quantification of Intestinal T Cells

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After deparaffinization, rehydration, antigen retrieval, and serum blocking, the sections were incubated with the primary antibody overnight at 4 °C. The primary antibody was a rabbit monoclonal anti-CD3G antibody (1:100; Abclonal, Wuhan, China). The sections were incubated with a Cy3-conjugated goat anti-rabbit IgG (H+L) (1:300; Servicebio, Wuhan, China) at room temperature for 50 minutes in the dark. Nuclei were counterstained with 4’,6-diamidino-2-phenylindole, and spontaneous fluorescence quenching was performed. The slides were observed under a Nikon Eclipse C1 fluorescence microscope (Nikon, Tokyo, Japan), and images were collected using a Nikon DS-U3 system (Nikon, Tokyo, Japan).
Two independent observers in a blinded manner counted the cells according to previous studies[20 (link),30 (link)]. The number of IELs per 100 epithelial cells was counted for at least 500 epithelial cells, and the average was calculated. Lymphocytes in the lamina propria were counted in five nonoverlapping high-power fields (400× magnification; field area, 0.111 mm2), and the mean of these 5 values was calculated. The results were expressed as counts per square millimeter (/mm2).
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5

Histological and Lipid Analysis of Liver and Ileum

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After being fixed for 24 h, the liver and ileum tissues were embedded in paraffin, cut into 4 μm thick sections and stained with hematoxylin and eosin (H&E) to evaluate the histological characteristics. For lipid accumulation determination, the frozen liver samples embedded in OCT compound were sliced and stained with Oil Red O solution. The above stained tissue sections were observed with Nikon Eclipse E100 (Nikon Corporation, Chiyoda Ward, Tokyo, Japan). For immunofluorescence assessment, the frozen ileum slices were incubated with anti-ZO-1 and anti-occludin antibodies (1:500; Servicebio, Wuhan, China) at 4 °C overnight, followed by incubation with an FITC-conjugated secondary antibody (Alexa fluor 488 goat anti-rabbit, 1:400; Servicebio, Wuhan, China) at 37 °C in dark for 50 min. Finally, the images were observed by a Nikon Eclipse C1 fluorescence microscope (Nikon Corporation, Chiyoda Ward, Tokyo, Japan) and recorded by a Nikon DS-U3 imaging system (Nikon Corporation, Chiyoda Ward, Tokyo, Japan). The positive area density of immunofluorescence was determined using Aipathwell image analysis software (Servicebio, Wuhan, China) and expressed as the ratio of positive cumulative optical density IOD value to the tissue area, which reflected the average depth of positive signal in the whole measurement area.
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6

Immunofluorescence Analysis of LC3 in H9c2 Cells

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H9c2 cardiomyoblasts were seeded in six-well plates with glass coverslips. After incubation and treatment as described above, the cells were fixed in 4% paraformaldehyde for 10 min and blocked with 5% bovine serum albumin in PBS for 30 min at room temperature. Subsequently, the cells were incubated overnight at 4°C with a specific primary antibody against LC3 (Proteintech #14600-1-AP, China, 1:200), followed by incubation with a secondary antibody (Beyotime #A0423, China, 1:500) at room temperature for 1 h. Nuclei were stained with DAPI for 10 min. Finally, fluorescence images were captured using an Eclipse C1 fluorescence microscope (Nikon, Japan) at corresponding excitation wavelengths, and the images were processed with ImageJ software (NIH, United States).
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7

Testicular Cell Apoptosis Detection

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The apoptosis level of testicular cells was detected by TUNEL (terminal deoxynucleotidyl transferase terminal dUTP nick end labeling) staining on paraffin sections, and the steps were carried out according to the instructions of the kit. Images were observed using an ECLIPSE C1 fluorescence microscope (Nikon, Tokyo, Japan).
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8

Altitudinal Regulation of Hemoglobin Beta

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To detect the expression level of the key protein (HBB) in lung parenchyma tissues, proteins were extracted from three Tibetan sheep at each altitude and separated on 12% SDS-PAGE gel. They were then transferred to polyvinylidene fluoride (PVDF) membranes, and these membranes were blocked and probed against HBB with rabbit polyclonal antibody (Abmart, Shanghai, China) at 4 °C overnight. Anti-β-tubulin polyclonal antibody (Abmart, Shanghai, China) was used as an internal reference. These membranes were further incubated with goat anti-rabbit IgG antibody (Abmart, Shanghai, China) for 2 h at room temperature. Protein bands were visualized using NcmECL Ultra reagents (NCM Biotech, Suzhou, China) in an X-ray room, and quantified using the AlphaEase FC software.
To detect the expression locations of HBB in lung parenchyma tissues, one paraffin section was selected from each altitude for immunofluorescence staining. Sections were blocked with 3% BSA (Servicebio, Wuhan, China) and incubated with rabbit polyclonal antibody against HBB (Abmart, Shanghai, China) at 4 °C overnight. Then, sections were incubated with goat anti-rabbit IgG antibody labeled with FITC (Abmart, Shanghai, China) for 50 min at room temperature and counterstained with DAPI. Finally, these sections were seen using an Eclipse C1 fluorescence microscope (Nikon, Tokyo, Japan) and imaged using CaseViewer software.
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9

Immunofluorescence Staining of LC3 in Cells

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Food & Function
Next, the cells were subjected to 4% paraformaldehyde fixation for 15 min, washed with cold PBS 3 times, and blocked with 5% BSA solution for 1 h. Then, the cells were immunostained with 1 : 500 LC3 antibody for 2 h followed by incubation with 1 : 200 secondary antibodies for 1 h. Finally, the nucleus was counterstained with DAPI (G1012, Servicebio, China) and immunofluorescence was imaged with a NIKON ECLIPSE C1 fluorescence microscope (Tokyo, Japan).
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10

Histopathological Analysis of Skin Specimens

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Morphologic changes in skin from both CTRL and CKO mice were determined by hematoxylin and eosin (HE) staining and Masson-Fontana staining. Skin tissue specimens were fixed overnight in 4% paraformaldehyde and embedded in paraffin. Three-micrometer-thick sections were generated and then immunohistochemically stained with antibodies against UFL1 (Bethyl Laboratories, A303-456A; dilution 1:100), Endothelin-1 (Proteintech, 12191-1-AP, dilution 1:100), or Ki-67 (Abcam, ab16667, dilution 1:200). The sections were scanned using an automated slide scanner to create high-resolution digital images (KFBIO). TUNEL staining was performed with a TUNEL detection kit (Recordbio Biological Technology) according to the manufacturer’s instructions. Images were acquired with an Eclipse C1 fluorescence microscope (NIKON).
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