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7 protocols using tnfα mab11

1

Multi-Marker Immune Profiling Protocol

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Antibodies used in this study are as follows: CD3 (clone SP-34–2; BD Biosciences), CXCR5 (MU5UBEE; eBioscience), GagCM9 tetramer (NIH tetramer core), CD28 (CD28.2; eBioscience), CD95 (DX2; BD Biosciences), CD279 (PD-1; clone EH12.2H7; BioLegend), CD8 (SK1; BD Bioscience), Ki67 (B56; BD Biosciences), CD4 (L200; BD Biosciences), GrzB (GB11; BD Biosciences), perforin (Pf-344; Mabtech), FoxP3 (206D; BioLegend), HLA-DR (L243; BioLegend), IFNλ (B27; BD Biosciences), TNFα (MAb11; BD Biosciences), and IL-2 (MQ1- 17H12; BD Biosciences).
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2

NK Cell Immunophenotyping Protocol

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NK cells were stained with antibodies recognizing CD56 (NCAM16.2), CD3 (UCHT1), CD34 (581), CD4 (RPA-T4), CD19 (HIB19), TNF-α (Mab 11), and IFN-γ (B27) from BD Biosciences (Franklin Lakes, NJ, USA), CD107a (H4A3), CD34 (561), and CXCR4 (12G5) from BioLegend (San Diego, CA, USA), along with propidium iodide (BD Biosciences), annexin V (BioLegend), and/or a Live/Dead fixable aqua dead cell stain kit (Thermo Fisher Scientific). Cells were examined on a BD Biosciences LSRFortessa instrument, and data were analyzed using FlowJo v10.1 (BD Biosciences). Statistical analyses were performed with GraphPad Prism 8.4.1.
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3

Flow Cytometry Analysis of 161519 TriKE

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For flow cytometry, carboxyfluorescein succinimidyl ester (CFSE) was obtained from Invitrogen (Carlsbad, CA, USA). Phycoerythrin (PE)-conjugated antibodies to human IL-15 were obtained from R&D Systems (catalog number, 34559; Minneapolis, MN, USA). TNF-α (MAb11), TNF-related apoptosis-inducing ligand (TRAIL; RIK-2) and CD107a (H4A3) were from BD Biosciences (Franklin Lakes, NJ, USA). PerCP-Cy5.5-conjugated antibodies to human CD3 were from BioLegend (HIT3a; San Diego, CA, USA). Alexa Fluor 647-conjugated antibodies to human CD56 (B159) and Ki67 (B56) were purchased from BD Biosciences. Alexa Fluor 647-conjugated 161519 antibody was labeled by an Antibody Labeling Kit according to the manufacturer’s instructions (GeneCopoeia, Rockville, MD, USA).
For staining of TRAIL, CD107a, and intracellular cytokines, PBMCs were co-cultured with tumor cells in the presence of 161519 TriKE and monensin (2.5 μg/mL; eBioscience, San Diego, CA, USA) for 4 h. After incubation, tumor cells were stained for surface markers, fixed, and permeabilized with FoxP3 fixation buffer according to the manufacturer’s instructions (eBioscience). The fixed cells were then stained with antibodies to IFN-γ and TNF-α. All samples were acquired on an LSR-II or FACSCalibur flow cytometer (Becton Dickinson, Franklin Lakes, NJ, USA) and were analyzed using FlowJo (TreeStar, Ashland, OR, USA).
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4

Comprehensive Flow Cytometry Panel

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For flow cytometry (FCM), cells were labeled with the following antibodies (clone): anti-mouse CD4 (RM4-5), CD8a (53-6.7 or KT15 for tetramer binding studies), and CD44 (IM7) and anti-human CD134 (OX40) (Ber-ACT35), CD137 (4-1BB) (4B4-1), CD25 (BC96), CD27 (O323), CD28 (CD28.2), CD3 (OKT3), CD357 (GITR) (ebioAITR), CD4 (OKT4), CD45RA (HI100), CD45RO (UCHL1), CD8 (SK1), IFN-γ (B27), IL-2 (MQ1-17H12), and TNF-α (MAb11) (all BD Bioscience or Biolegend). Cells were acquired using the FACSCelesta BVR12 (BD Biosciences) or Guava EasyCyte 12 Flow Cytometer (EMD Millipore). Antibody quality was checked and gating was performed using isotype controls. FlowJo Software (10.2) (FlowJo, LLC) was used for the analysis of FCM data.
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5

Isolation and Cytokine Profiling of Human Monocytes

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After written informed consent was provided, human donor blood was
obtained at the National Institutes of Health (NIH) Clinical Center under
Institutional Review Board (IRB)–approved protocols. PBMCs were purified
from blood by Ficoll (Fisher Scientific) density gradient centrifugation, washed
with RPMI 1640 plus penicillin, streptomycin, and L-glutamine (Gibco) along with
10% FBS (Sigma-Aldrich). Cells were resuspended to a concentration of 1
× 106 cells/ml and aliquoted (1 ml/well) into 48-well plates.
LPS (0.5 μg/ml Sigma-Aldrich) and brefeldin A (5 μg/ml,
Sigma-Aldrich) were added before incubation at 37 °C overnight. After
incubation, cells were washed with FACS buffer and stained with LIVE/DEAD Blue
(Life Technologies). Cells were then fixed in 1.6% paraformaldehyde for
10 min at room temperature, spun down, resuspended in 100% cold
methanol, and incubated overnight at −20 °C. Cells were then
washed and stained with fluorochrome-conjugated antibodies: CD14 (MφP9,
BD Biosciences), CD11c (B-ly6, BD Biosciences), Ikaros (R32-1149, BD
Biosciences), IL-1β (AS10, BD Biosciences), TNF-α (MAb11, BD
Biosciences), and IL-6 (MQ2-13A5, eBioscience). The data were gated on
CD11c+CD14+ monocytes.
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6

Multicolor Flow Cytometry of PBMCs and Lung Lymphocytes

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Monoclonal antibodies used to stain human PBMCs were from BioLegend CD27 (O323), CD8α (RPA-T8), CD3 (OKT3), IFN-γ (4S.B3), TNFα (MAb11), and BD Biosciences CD4 (RPA-T4). Monoclonal antibodies used to stain lung-derived murine lymphocytes were BioLegend CD3 (17A2), CD8α (53–6.7), CD4 (RM4–5); eBioscience CD11b (M1/70), CD44 (IM7); and BD Biosciences IFN-γ (XMG1.2). Samples were run on a BD Biosciences LSRII flow cytometer and analyzed with FlowJo software.
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7

Multiparametric Immune Phenotyping

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Cells were stained with fluorochrome-conjugated Abs specific for CD3 (clone SP-34-2; BD Biosciences), CCR6 (clone 11A9), CD95 (clone DX2; BD Biosciences), PD-1 (Clone EH12.1; Biolegend), CD8 (Clone SK1; BD Bioscience), CD4 (clone; OKT4; Biolegend), α4β7 (Act1, NHP reagent resource), LIVE/DEAD fixable Near-IR Dead Cell stain (Invitrogen), Ki-67 (Clone B56; BD Biosciences), IFN-γ (Clone B27; BD Biosciences), CD95 (clone DX2; BD Biosciences), CD28 (Clone 28.2; BD Biosciences), IL-17A (eBio64DEC17; eBioscience), TNF-α (MAb11; BD biosciences), IL-22 (IL22JOP; ebiosciences), IL-7R (Clone eBioRDR5; eBioscience), CD161 (HP3G10; Biolegend), TCR7.2 (3C10; Biolegend), CD69 (FN50; Biolegend), IL-18Rα (H44; Biolegend), streptavidin-BV421- conjugated MR1 tetramer (NIH tetramer core facility), Granzyme B (Clone GB1; BD Biosciences 1), and perforin (Clones Pf-80/164; BD Biosciences).
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