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Cy3 conjugated goat anti rat

Manufactured by Jackson ImmunoResearch

Cy3-conjugated goat anti-rat is a secondary antibody that is labeled with the Cy3 fluorescent dye. It is designed to detect and bind to rat primary antibodies in various immunoassays and immunochemical techniques.

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9 protocols using cy3 conjugated goat anti rat

1

Quantification of Aortic ICAM-1 Expression

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Rings of the aorta were embedded in the OCT medium (Thermo) and frozen at −80°C using Leica CM1920 automatic cryostat (Leica, Wetzlar, Germany). The 5 μm thick cross-section slides were put on the microscopic glasses coated with poli-L-lysine and fixed for 10 min in 4% buffered formalin (Merck) and used for immunostaining of intercellular cell adhesion molecule 1 (ICAM-1). Aortic rings were preincubated with 5% normal goat serum (Jackson Immuno Research) and 2% dry milk in PBS, then immunostained using rat-anti-mouse ICAM-1 (eBioscience; 1:200) primary antibody overnight at 4°C. A secondary antibody Cy3-conjugated goat-anti-rat (Jackson Immuno Research; 1:300) was used, respectively, for 30 min at room temperature. Cell nuclei were visualized by Hoechst 33258 (Sigma; 1:1000) solution, and unspecific fluorescence of aortic elastic fibers were used as a background counterstaining channel. Images were acquired using an AxioCam HRm digital monochromatic camera and an AxioObserver.D1 inverted fluorescent microscope (Carl Zeiss). ICAM-1 fluorescence was calculated as the ICAM-1 expression area divided by the tissue area expressed as a percentage (ImageJ program).
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2

Imaging of Drosophila Larval Wing Discs

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Larval tissues were collected and treated at 110–120 hours after egg deposition. Larvae were dissected in 1xPBS at room temperature and fixed for 20 minutes in 4% formaldehyde and the immunostaining procedure was performed as previously described35 (link). After several washes in 1xPBS+0,3% Triton X-100, wing imaginal discs were mounted on microscopy slides with Fluoromount G. Subsequently, samples were analysed with TCS SL Leica confocal system. Digital images were assembled using the Adobe Photoshop software. The following primary antibodies were used: monoclonal mouse anti-ci 1:50 (DSHB) and anti-phosphoJNK 1:400 (Cell Signaling Technology) were detected with Cy3-conjugated goat anti-mouse 1:500 (Jackson); polyclonal rabbit anti-Awd12 (link) 1:1000 was detected using Cy3-conjugated goat anti-rabbit 1:1000 (Jackson) or DyLight 647-conjugated goat anti-rabbit 1:500 (Jackson); rabbit anti-MMP1 1:50 (DSHB) was detected using Cy3-conjugated goat anti-rabbit 1:1000 (Jackson); anti-cleaved-Caspase3 1:100 (Cell Signaling Technology) was detected using Cy3-conjugated goat anti-rabbit 1:2000 (Sigma); anti-ξPKC 1:200 (Santa Cruz Biotechnology) was detected with Cy5-conjugated goat anti-rabbit 1:1000 (Jackson). DE-Cad 1:25 (DSHB) was detected using Cy3-conjugated goat anti-rat 1:1000 (Jackson).
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3

Lung Metastasis Histological Analysis

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Lungs were fixed in 4% buffered formalin (for at least 48 h). After macroscopic analysis of the number of metastases, the lungs were prepared using the paraffin method, cut into 6 μm sections on an Accu-Cut® SRM™ 200 Rotary Microtome and stained with hematoxylin and eosin.
Light microscopic examination and photographic documentation were performed using an Olympus BX53F microscope equipped with a digital camera. Pictures were taken under the magnification 20× and 200×.
For immunohistochemical staining of VCAM-1 and vWF in the lung vasculature following deparaffinization, sections were pretreated according to the citrate-based HIER protocol and then preincubated with 5% goat serum (Jackson ImmunoResearch) and 2% dry milk to minimalize non- specific binding of antibodies. Primary rat-anti-mouse VCAM-1 (Chemicon) or rabbit-anti-mouse vWF (Abcam) antibodies were used, followed by Cy3-conjugated goat-anti-rat or Cy3- conjugated goat-anti-rabbit secondary antibodies (Jackson ImmunoResearch), respectively. Images were acquired using the AxioObserver D2 inverted fluorescent microscope (Carl Zeiss) and an AxioCam HRm monochromatic digital camera and stored as TIFF files. Fluorescence intensity was analysed automatically by Columbus software (Perkin Elmer).
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4

Immunohistochemical Analysis of Macrophages

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Liver samples obtained from EPO or diluent-injected mice were frozen at −80 °C, sectioned, and stained for F4/80 (eBioscience, 14-4801-81) followed by a Cy3 conjugated Goat anti Rat (Jackson ImmunoResearch, CAT#112-165-167).
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5

Immunofluorescence Analysis of Pancreatic Tissues

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Deparaffinized pancreatic sections (5 µm) were blocked for 30 min with blocking solution (20% Fetal Bovine Serum + 2% Roche Blocking Reagent). Sections were incubated overnight with primary antibodies and 1–2 h with secondary antibodies at room temperature with the following primary antibodies: guinea pig anti-human insulin (1∶1000; Linco Research), rabbit anti-glucagon (1∶1000, Linco Research), rat anti-mouse CD31 (1∶400; BD Biosciences). Secondary antibodies FITC-conjugated donkey anti-guinea pig, CY3-conjugated donkey anti-rabbit, AMCA-conjugated donkey anti-guinea pig, and CY3-conjugated goat anti-rat (Jackson ImmunoResearch Laboratories) were used at concentrations recommended by the manufacturer. The nuclei were stained with DAPI (Invitrogen, Molecular Probes). Images were obtained with either Nikon Eclipse E400 microscope or Tissue Genostics Tissue/Cell High Throughput Imaging and Analysis System at Northwestern University Cell Imaging Facility.
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6

Immunofluorescent Labeling of CNS and Peripheral Tissues

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CNS and peripheral tissue were dissected and fixed using standard techniques [32] . Rat anti-FruM antibody was used at 1∶100 (Lee et al. 2000). Rabbit anti-GFP was used at 1∶500 (Invitrogen). CY3-conjugated goat anti-rat and FITC-conjugated goat anti-rabbit secondary antibodies were used at 1∶1000 (Jackson Immuno-research).
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7

Yeast Meiotic Chromosome Spread Analysis

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Surface nuclear spreads were performed as described previously (Jin et al, 2009 (link)). In brief, yeast cells enriched at prophase I (∼5 h after induction of meiosis) were spheroplasted by lyticase treatment. Spheroplasts were then fixed and poured onto a glass slide. The slide was then rinsed with PhotoFlo 200 and air-dried, followed by PBS buffer with 3% BSA to block for 2 h at room temperature. Anti-V5 antibody (R960-25; Thermo Fisher Scientific) was used to detect V5-Csm4 and Ndj1-V5; anti-HA antibody (12CA5; Roche/Sigma-Aldrich) was used to detect Mps2-3HA. Rec8-GFP was detected by an anti-GFP mouse monoclonal antibody (ab209; Abcam). Secondary antibodies (FITC-conjugated goat antirabbit, rhodamine-conjugated goat antimouse, and Cy3-conjugated goat antirat; Jackson ImmunoResearch Laboratories) were used at a dilution of 1:500. Mounting medium with DAPI was added before microscopy. Images were acquired with an epifluorescence microscope (Axio Imager M1; Zeiss) with a 100× objective lens (NA = 1.40) at room temperature.
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8

Immunofluorescence Microscopy of T. cruzi

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T. cruzi-infected Vero cells grown on round glass coverslips or parasites adhered to poly-lysine coated microscope slides were fixed with 4% paraformaldehyde for 30 min, permeabilized with 0.1% Triton X-100 for 3 min, and washed twice. After blocking samples in 2% bovine serum albumin (BSA), slides were incubated with the anti-TcCAL1 or pre-immune antiserum, an anti-paraflagellar rod mouse monoclonal antibody (anti-PFR, kindly provided by Dr. S. Schenkman) to reveal the flagellum or an anti-tubulin rat antibody, clone YL1/2 (anti-TUB, Chemicon) to detect the parasite body by its affinity to tyrosinated tubulin (diluted 1:300, 1:2, or 1:500, respectively, in 1% BSA). The secondary antibodies were Alexa Fluor 488-conjugated goat anti-mouse (Invitrogen) or Cy3-conjugated goat anti-rat (Jackson), both diluted 1:1,000. All washes and compound dilutions were performed in PBS. All incubations lasted for 1 h each at room temperature. Slides were mounted on Vectashield® Antifade reagent (Vector Laboratories), containing 10 mg/ml of 4,6-diamino-2-phenylindole (DAPI). The Cells were observed using an Olympus BX-61 fluorescence microscope.
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9

Surface Spread Nuclear Localization

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Surface nuclear spreads were performed as described previously (Jin et al., 2009) . In brief, yeast cells enriched at prophase I (~5 hours after induction of meiosis) were spheroplasted by lyticase treatment. Spheroplasts were then fixed and poured onto a glass slide. The slide was then rinsed with PhotoFlo 200 and air dried, followed by PBS buffer with 3% BSA to block for 2 hours at room temperature. Anti-V5 antibody (R960-25; Thermo Fisher Scientific) was used to detect V5-Csm4 and Ndj1-V5; anti-HA antibody (12CA5; Roche/Sigma) was used to detect Mps2-3HA. Rec8-GFP was detected by an anti-GFP mouse monoclonal antibody (ab209, Abcam). Secondary antibodies (FITC-conjugated goat anti-rabbit, rhodamine-conjugated goat anti-mouse, and Cy3-conjugated goat anti-rat; Jackson ImmunoResearch Laboratories) were used at a dilution of 1:500. Mounting medium with DAPI was added before microscopy. Images were acquired with an epifluorescence microscope (Axio Imager M1, Zeiss) with 100× objective lens (NA=1.40) at room temperature.
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