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7 protocols using geltrex ldev free

1

Isolation and Culture of Primary Human Liver Cells

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Immediately after collection, the surplus liver biopsy was washed three times in 1X Dulbecco’s PBS (DPBS) and cut in pieces of 0.3–0.5 mm. The tissue samples were then partially digested by incubation with trypsin-EDTA (0.05%, ref. 25300054 Thermo Fisher Scientific) at 37°C for 15 minutes and vortexing every 5 minutes. The trypsin-EDTA solution was carefully removed by aspiration, and the liver biopsy pieces were washed twice with complete medium (S1 File). The samples were then transferred to 6-well culture dishes coated with reduced growth factor basement membrane matrix (ref. A1413301, Geltrex LDEV-Free, Thermo Fisher Scientific) and covered by complete medium (S1 File). Twenty-four hours later, complete medium was replaced by basal medium (S1 File). Tissue samples were left to adhere to the culture dishes for 48 hours before changing the medium for the first time, and non-adherent biopsy pieces were discarded. PLC outgrowth from the adherent biopsy pieces was observed after 7 to 10 days in culture. After 15–20 days of culturing, when the PLC monolayer encompassed about 300–500 cells, the biopsy pieces were removed and discarded. The adherent PLCs (passage 1 (P1)) were then trypsinized and either frozen or passaged into a new coated 6-well culture dish. In the P2 culture, the PLCs were expanded to 80%-90% confluence (~50,000 cells/well).
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2

Astrocyte-Mediated Neuronal Differentiation

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The NSC induction was conducted from iPSCs obtained from Kangstem Biotech (Seoul, Korea) using a neural induction medium (#A1647801, Gibco). We plated NSCs on geltrex LDEV-Free (#A1413302, Thermo Fisher)-coated plates. For neural differentiation, NSCs were cultured in a neurobasal medium (#21103049, Gibco) with 2% supplement B27 (#17504044, Gibco) and 1% Glutamax (#35050061, Gibco). For astrocytic differentiation, NSCs were incubated in high-glucose DMEM (#SH30022.01, Hyclone) containing 1% N-2 supplement (#17502048, Gibco), 1% FBS, and 1% Glutamax (#35050–061, Gibco). After 5 days of astrocytic differentiation, astrocytes were cultured on neural differentiation media for 48 h with cortisol, and ACM were harvested.
Cultures of mouse primary hippocampal astrocytes were performed as described in the previous protocol [17 (link)]. Hippocampal astrocytes from postnatal day 1 (P1) mice were acquired in compliance and approval with the Institutional Animal Care and Use Committee of Seoul National University (SNU-190523–1-1). In brief, hippocampal astrocytes cultured on poly- D-lysine coated six-well plates were incubated in MEM (Hyclone) supplemented with glucose (0.6% wt/vol), 10% horse serum (vol/vol), and 1% antibiotic–antimycotic mixture.
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3

HUVEC Viability Assay with NCCM

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HUVECs (Life Technologies, pool of 10 donors) were expanded in basal medium (BM, 300 mOsm) consisting of Medium 200 supplemented with low serum growth factors (LSGS, Life Technologies) and 1% P/S until 80% confluency. A 24‐well plates were coated with 120 μl/well Geltrex LDEV‐free (Thermo Fisher Scientific, Breda, the Netherlands), after which HUVECs at passage two were seeded at 80,000 cells per well. Cells were incubated for 24 h at 37°C and 5% CO2 in three different medium conditions: BM, NCCM with the same supplements as BM or NCM added to BM (n = 5 biological replicates for each condition). The NCM concentration in medium was adjusted to obtain similar GAG content to NCCM. After 24 h, cells were incubated for 15 min with 10 μM Calcein AM and 10 μM propidium iodide. Per well, three pictures were taken at 4× magnification using a fluorescence microscope (Zeiss Axiovert, Zeiss, Jena, Germany). Per sample, the images were taken at approximately the same locations, covering the largest part of the well without overlap. To assess whether effects of NCCM or NCM may be dependent on HUVEC donor variation, the same experiment was repeated with HUVECs (used at passage 2) from two separate additional donors (Cell Applications, San Diego, CA, n = 2 biological replicates each).
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4

Differentiated hiPSC-CM Tissue Engineering

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Differentiated hiPSC-CMs were dissociated with TrypLE Select Enzyme (Gibco) for 8 min, followed by collagenase II (1.5 mg/mL, Sigma-Aldrich) for 7 min. Cells were dispersed in EB6 medium (Supplemental Table S1) and centrifuged at 390 × g for 5 min. The cell pellet was suspended in EB6 medium to which 0.55 mg/mL bovine collagen I (Gibco), 0.08 mg/mL Geltrex (LDEV-Free, Gibco), and 1% RevitaCell supplement was added (modified from 21 ), reaching a cell concentration of 1.1 × 105 cells/µL. Next, 55 µL of the cell-matrix mixture was pipetted on a 30 mm organotypic filter (PICMORG50, Merck Millipore), forming a disc of approximately 8 mm diameter and 2 mm thickness. After solidification of the tissue disc (30 min at 37 °C), 1 mL of EB 6 medium was added below the filter and was exchanged every other day for a total of 5 days in culture (Figure 1B; Figure S1A).
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5

iPSC-derived Neuronal Model for TSC

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TSC patient (P1, GM06149; P2, GM03958) and control fibroblasts (C3, GM23973) were obtained from the Coriell Biorepository (all teenage donors), and controls C1 (infant) and C2 (teenage) were obtained from anonymous control donors. The selected TSC patients were reported with mental retardation and seizures along with other TSC-related abnormalities. iPSC reprogramming was done based on polycistronic construct with OCT3/4, c-MYC, SOX2, and KLF4 (Warlich et al., 2011 (link)). All the iPSC lines were cultured in Essential 8 medium (Gibco) on Geltrex LDEV-free (Gibco). Generation of in-direct contact iPSC-neuronal mono-cultures was performed as described earlier (Nadadhur et al., 2017 (link)) with slight modifications. Neuronal mono-cultures with a density of 62.5 K/2.0 cm2 in the Std condition medium contained Neurobasal composition with brain-derived neurotrophic factor (BDNF) (20 ng/mL; Peprotech) and cAMP (1 μM; Sigma). The Std + IGF-1 and Std + Rapa conditions contained Std medium with IGF-1 (10 ng/mL; Peprotech) or Rapa (30 nM; Sigma), respectively. For detailed culturing methods and culture conditions for MEA experiments please see Supplemental Experimental Procedures.
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6

Angiogenic Potential of Macrophage-Conditioned Media

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Primary human umbilical vein endothelial cells (HUVEC) were purified from human umbilical vein as previously reported (Bannoud et al., 2022 (link)). For tube formation assays, HUVEC were starved for 2 h in RPMI 1640 without FBS. Afterwards, cells were trypsinised, collected and plated on an angiogenesis micro slide (Ibidi GmbH, Gräfelfing, Germany) at a density of 1 × 104 cells per well over 10 μL of solidified Geltrex LDEV‐free (Gibco). Negative control cells were incubated with serum‐free RPMI; positive control cells were exposed to RPMI 15% FBS + 20 ng/mL of human VEGF and the remaining cells were stimulated with conditioned media from macrophages in a 1:2 dilution. Then, the micro slide was incubated at 37°C for 6 h. Finally, the formation of tubular structures in the total area was photographed at a 4× magnification by a Nikon Eclipse microscope. Branching points were considered for the count, using the multi‐point tool of Image J Software for the analysis.
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7

Differentiation of hiPSC-CMs Using Small Molecules

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Pluripotent stem cells were generated by reprogramming skin fibroblasts (ID MRIi004-A) of a healthy human donor according to established methods 19 (link). The study participant provided written informed consent and the investigation conformed to the principles outlined in the Declaration of Helsinki. For maintenance culture, hiPSCs were expanded in matrix-coated dishes (Geltrex LDEV-Free, Gibco), using Essential 8 medium (Gibco), which was changed on a daily basis. Cells were split at 85% confluency, using EDTA for dissociation (Versene solution; Gibco). A state-of-the-art differentiation protocol for hiPSC-CMs using small molecules to induce differentiation was adapted from Chen and colleagues 20 (link). Briefly, cardiac differentiation was initiated at about 85% confluence by applying chemically defined factors for 24 h (medium A) and subsequent 48 h (medium B, PSC Cardiomyocyte Differentiation Kit; Gibco). After 72 hours, differentiation of hiPSC-CMs was continued for 12 days with Cardiomyocyte Maintenance Medium (PSC Cardiomyocyte Differentiation Kit; Gibco) that was changed every other day. The workflow is displayed in Figure 1A.
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