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17 protocols using b220 apc

1

Comprehensive Immunophenotyping of Adipose Tissue

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For flow cytometry analysis, the following antibodies were used: Fixable Viability Dye Aqua; CD45-BV711 (30F11: cat#563709) (BDBioscience); F4/80-eFlour450; F4/80-PE (BM8; cat#48-4801-82 & 12-4801-82); CD11b-PerCPCy5.5 (M1/70; cat#45-0112-82); CD11c-APC-eFluor780 (N418; cat#47-0114-82); B220-APC (RA3-6B2; cat#17-0452-82); MHCII-Alexa Fluor 700 (M5/114.15.2; cat#56-5321-82) (eBioscience) and CD3-BV605 (17A2; cat#100237); CD206-PECy7 (C068C2; cat#141709) (Biolegend). For western blot analysis, the following antibodies were used: pHSL (Ser660; cat#4126), pHSL (Ser563; cat#4139), HSL (cat#4107), ATGL (cat#2439), Actin (cat#4967), UCP-1 (cat#14670), pNFkB (cat#3033), NFkB (cat#8242), (Cell Signaling), Caspase-1 (Genentech). For whole mount staining: F4/80-PE (BM8; 12-4801-82; eBioscience), TUBB3-AlexaFluor488 (TUJ1; cat#801203; Biolegend), Tyrosine hydroxylase (cat#2792; Cell Signaling), B220-APC (RA3-6B2; cat#17-0452-82; eBioscience), anti-rabbit IgG-APC (Jackson; cat# 111-136-144), anti-rabbit IgG-AlexaFluor 488 (cat#A11008; Life Technologies).
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2

Comprehensive Immunophenotyping of Adipose Tissue

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For flow cytometry analysis, the following antibodies were used: Fixable Viability Dye Aqua; CD45-BV711 (30F11: cat#563709) (BDBioscience); F4/80-eFlour450; F4/80-PE (BM8; cat#48-4801-82 & 12-4801-82); CD11b-PerCPCy5.5 (M1/70; cat#45-0112-82); CD11c-APC-eFluor780 (N418; cat#47-0114-82); B220-APC (RA3-6B2; cat#17-0452-82); MHCII-Alexa Fluor 700 (M5/114.15.2; cat#56-5321-82) (eBioscience) and CD3-BV605 (17A2; cat#100237); CD206-PECy7 (C068C2; cat#141709) (Biolegend). For western blot analysis, the following antibodies were used: pHSL (Ser660; cat#4126), pHSL (Ser563; cat#4139), HSL (cat#4107), ATGL (cat#2439), Actin (cat#4967), UCP-1 (cat#14670), pNFkB (cat#3033), NFkB (cat#8242), (Cell Signaling), Caspase-1 (Genentech). For whole mount staining: F4/80-PE (BM8; 12-4801-82; eBioscience), TUBB3-AlexaFluor488 (TUJ1; cat#801203; Biolegend), Tyrosine hydroxylase (cat#2792; Cell Signaling), B220-APC (RA3-6B2; cat#17-0452-82; eBioscience), anti-rabbit IgG-APC (Jackson; cat# 111-136-144), anti-rabbit IgG-AlexaFluor 488 (cat#A11008; Life Technologies).
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3

Comprehensive B Cell Immunophenotyping

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Bone marrow of Myce and littermate wild‐type control were harvested into single‐cell suspension with red cell lysis and stained with CD19‐Pacific Blue (1D3, BD, NJ, USA), B220‐PE cy7 (RA3‐6B2, BD), CD24‐APC (M1/69, in house), IgM‐FITC (331.12, in house), CD43‐PE (S7, BD). Spleen red cell lysed single cell suspensions were stained with CD19‐BB700 (1D3, BD), B220‐APC (Thermo Fisher, Waltham, USA), CD23‐PE cy7 (B3B4, Thermo Fisher), CD21‐BV421 (7E9, BioLegend, San Diego, USA), CD138‐PE (281–2, BD). The peritoneal cavity wash was stained with CD19‐PE (ID2, in house), B220‐APC (RA3‐6B2, Thermo Fisher), CD23‐PE cy7 (B3B4, Thermo Fisher), CD5‐BB700 (53–7.3, BD), CD11b‐eFlour450 (M1/70, Thermo Fisher). Lymph node and thymus of single cell suspensions were stained with CD19‐BUV395 (1D3, BD), (TCRβ‐PE (H57‐597, BD), CD4‐BV421 (GK1.5, BioLegend) and CD8a‐PerCp/Cy5.5 (53–6.7, eBioscience, San Diego, USA). Flow cytometry analysis was performed on a BD LSRFortessa X‐20 analyzer (BD).
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4

Comprehensive Hematopoietic Cell Analysis Protocol

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Flow assisted cell sorting (FACS) was performed as described elsewhere (16 (link)) with the following conjugated antibodies; Mac1 PE, Gr1 FITC, B220 APC, B220 FITC, CD19 PE, surface IgM PE, CD43 FITC, CD3 PE, CD4 APC, CD8 FITC, CD71 PE, Ter119 FITC, Sca-1 PE, cKit FITC, cKit APC-Cy7, IL7Ra PECy7, CD34 FITC, CD16/32 PE (eBiosciences or BD Biosciences). StemSep Mouse Hematopoietic Progenitor Kit Lineage Positive antibody cocktail (Stem Cell Technologies, Vancouver, Canada) was used to detect lineage positive bone marrow cells, stained as previously described (16 (link)). Apoptosis assays were conducted using AnnexinV-FITC Apoptosis Detection Kit I following the manufacturer’s recommended protocol. IHC and immunoblotting were performed as previously described (49 (link)). Formalin-fixed paraffin embedded sections were stained with hematoxylin and eosin (H&E), myeloperoxidase (MPO) (A0398, DAKO), CD3 (MCA1477, AbD Serotec), B220 (553086, BD), Ter119 (116201, BioLegend). Stained slides were scanned and imaged as described elsewhere (49 (link)). For immunoblots, primary antibodies used were anti-V5 (ab9116, Abcam or R960-25, Life Technologies), and beta-actin (Cell Signaling Technology). Protein was visualized using Pierce ECL Western Blotting Substrate (Thermo Scientific, Illinois, USA) and Amersham Hyperfilm ECL (GE Healthcare Ltd, Buckinghamshire, UK).
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5

Flow Cytometry Analysis of Immune Cells

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Mononuclear cells from the spleens and brains were surface-labeled with anti-mouse CD4 FITC (eBioscience, Cat #: 11-0042), CD25 PE (eBioscience, Cat #: 12-0251), NK1.1 PE (eBioscience, Cat #: 12-5941-82), CD8 FITC (eBioscience, Cat #: 11-0081-81), and B220 APC (eBioscience, Cat #: 17-0452-81). For Tregs labeling, the cells were further fixed and permeabilized using a Foxp3/transcription Factor Staining Buffer kit (eBioscience, Cat #: 00-5523) and then stained with anti-mouse Foxp3 APC (eBioscience, Cat #: 17-5773). Cells were washed and suspended in flow cytometry staining buffer (eBioscience, Cat #: 00-4222-57). FACS analysis was performed using Accuri C6 software (BD Biosciences, San Jose, CA, USA).
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6

Quantifying Peripheral B Cells After SpA Challenge

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To quantify the effect of SpA infusions on peripheral B cells, spleens were harvested 72 h post-SpA challenge and cell suspensions prepared, as described previously (43 (link), 46 (link), 56 (link)). Cells were maintained on ice throughout. For each mouse, 2 × 106 cells were stained per panel in the presence of 20 μg/ml of Fc block (Pharmingen, Becton Dickinson) followed by staining with: B220-APC (eBioscience), CD3-PerCP Cy5.5 (BD), IgMa-PE (BD) or IgMb-PE (BD). For live/dead cell discrimination, we used fixable blue (Invitrogen) following the manufacturer's instructions. After staining, cells were washed and fixed in 4% paraformaldehyde. At least 5 × 105 events per sample were collected on a LSR II flow cytometer (BD) running FACSDiva software. Data were analyzed with FlowJo (Treestar).
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7

Multicolor Flow Cytometry Analysis

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Cells resuspended in PBS were stained for different FACS antibodies and subsequently incubated in dark under room temperature for 20 minutes. Then cells were washed and analyzed by FACS Fortessa. CD34-APC(Cat#17–0349)/PE-Cy7(Cat#25–0349), CD71-APC(Cat#17–0719)/ PE-Cy7(Cat#25–0719), Glycophorin A(GPA)-APC(Cat#17–9987), B220-APC(Cat#17–0452), CD19-PE(Cat#12–0199), CD3-PE-Cy7(Cat#25–0038), CD41-PE-Cy7(Cat#25–0419), CD14-PerCP-eFluor610(Cat#61–0149)/PE-Cy7 (Cat#25–0149), Annexin V-APC(Cat#88–8007), and human CD45-PE (Cat#12–9459) antibodies were purchased from eBioscience; Glycophorin A (GPA)-PE(Cat#555570), CD11b-BV421(Cat#562632)/BV605(Cat#562721), CD19-BV605(Cat#562653) were purchased from BD Biosciences.
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8

Immune Signaling Pathway Analysis

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Lipopolysaccharide (LPS, Escherichia coli 0111:B4), lipoteichoic acid (LTA), and polyinosinic:polycytidylic acid (Poly I:C) were from Sigma-Aldrich, and phosphorothioate-modified CpG ODN was synthesized by Sybersyn. Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) (197G2) rabbit mAb, Phospho-SAPK/JNK (Thr183/Tyr185) (81e11) rabbit mAb, Phospho-p38 MAPK (Thr180/Tyr182) (D3F9) rabbit mAb, Phospho-NF-κB p65 (Ser536) (93H1) rabbit mAb, EEA1 (C45B10) rabbit mAb, Rab5 (C8B1) rabbit mAb, and Rab7 (D95F2) rabbit mAb were from Cell Signaling Technology. CD107a/LAMP-1 mouse mAb was from BioLegend; β-actin mouse mAb and Ccz1 antibodies (L-20) were obtained from Santa Cruz Biotechnology; SNX10 antibody (HPA015605) was acquired from Sigma-Aldrich. Mouse CD4-FITC, CD8-PE, B220-APC, CD11b-PE, CD11b-APC, Gr1-FITC, Ly6C-PE, and F4/80-APC antibodies were purchased from eBioscience. Fluorescein isothiocyanate isomer I (FITC) and Cell Counting Kit-8 (CCK-8) were from Sigma-Aldrich; Alexa Fluor® 488 dye and Alexa Fluor® 647 dyes were from Thermo Fisher Scientific.
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9

Immunophenotypic Analysis of Hematopoietic Cells

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For immunophenotypic analysis of lineage positive cells, PB, BM and spleen samples were processed with 1× red blood cell lysis buffer, and then incubated with CD11b-PE-cy7 (25–0112-81, eBioscience), Gr1-eFluor450 (48–5931-82, eBioscience), CD3-PE (12–0031-83, eBioscience) and B220-APC (17–0452-82, eBioscience). To distinguish donor from recipient hematopoietic cells, PB were stained with CD45.1-Brilliant Violet 510 (110741, BioLegend), and CD45.2-APC-eFluor780 (47–0454-82, eBioscience) or CD45.2-eFluor450 (48–0454-82, eBioscience). For HSPC analysis, BM cells were washed and incubated for 30min with biotin conjugated lineage markers (CD11b, Gr1, Ter119, CD3, B220, mouse hematopoietic lineage biotin panel (88–7774-75 eBioscience)), followed by staining with streptavidin eFluor780 (47–4317-82, eBioscience), Sea-1-PE (12–5981-82, eBioscience), c-Kit-APC (17–117181, eBioscience), Flk2-PE-Cy5 (15–1351-81, eBioscience), CD150-PE-Cy7 (115914, BioLegend) and CD48-FITC (11–0481-85, Affymetrix) or CD48-eFluor450 (48–0481-80, eBioscience). SLAM-HSC were identified based on expression of LinSca1+c-Kit+CD150+CD48. MPP2, MPP3 and MPP4 were identified based on expression of LinSca_1+c-Kit+Flk2CD150+CD48+, LinSca1+c-Kit+Flk2CD150CD48+ and LinSca1+c-Kit+Flk2+CD150CD48+, respectively.
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10

Immunophenotyping of Differentiating Cells

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For differentiation of differentiating cells, cells were harvested, washed and stained with the following antibodies: CD44-APC (BD, IM7), CD25-FITC (eBioscience, PC61.5), CD93-APC (eBioscience, AA4.1), B220-FITC (BD, RA3–6B2), CD19-APC (eBioscience, 1D3), IgM-PE (eBioscience, eB121–15F9), B220-APC (eBioscience, RA3–6B2), Thy1.2-FITC (eBioscience, 30-H12), CD135-APC (BioLegend, A2F10), CD127-PE (eBioscience, A7R34), BP-1-PE (eBioscience, 6C3), CD24-APC-Cy7 (eBioscience, M1/69), CD43-APC (BioLegend, S11). For intracellular staining, cells were permeabilized using 0.05 % saponin and stained with antibodies against CD79a-APC (BioLegend, F11–172), CD79b-FITC (BioLegend, HM79–12), CD179a-BV421 (BioLegend, R3), CD179b-BB700 (BioLegend, LM34). For the Bcl-2-specific stain, the Foxp3 staining kit (ThermoFisher) was used. As antibody, Bcl-2-AF647 (BioLegend, 10C4) was used. Analysis was carried out using a FACS Canto II cytometer (Beckton Dickinson).
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