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5 protocols using anitrocellulose membrane

1

Western Blot with Modifications

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Western blotting was performed as described earlier [24] (link), [25] (link), [26] (link) with modifications. Briefly, cells were scraped in lysis buffer, transferred to microfuge tubes and spun into pellet. The supernatant was collected and analyzed for protein concentration via the Bradford method (Bio-Rad). SDS sample buffer was added to 30–50 µg total protein and the sample was boiled for 5 min. Denatured samples were electrophoresed on NuPAGE Novex 4–12% Bis-Tris gels (Invitrogen) and proteins transferred onto a nitrocellulose membrane (Bio-Rad) using the Thermo-Pierce Fast Semi-Dry Blotter. The membrane was then washed for 15 min in TBS plus Tween 20 (TBST) and blocked for 1 h in TBST containing BSA. Next, membranes were incubated overnight at 4°C under shaking conditions with primary antibody. The next day, membranes were washed in TBST for 1 h, incubated with secondary antibody (Li-Cor Biosciences) for 1 h at room temperature, washed for one more hour and visualized under the Odyssey Infrared Imaging System (Li-COR, Lincoln, NE).
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2

Quantitative Western Blot Analysis of PSD Proteins

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Western blot analysis was performed on the PSD fractions isolated using
Syn-PER Reagent, followed by ultracentrifugation to enrich for PSD as described
above. Separation of the proteins in the samples obtained was done by 12% SDS-
polyacrylamide gel electrophoresis. The separated proteins were transferred to a
nitrocellulose membrane (Bio-Rad) and incubated with PSD95, CAMK2A, GAPDH,
UCHL1, and PFN (all 1:1,000; Cell Signaling) antibodies overnight. Actin
(1:1,000; Cell Signaling) was used as a loading control. The membrane was
incubated with proper fluorescent secondary antibodies (1:10,000) (LI-COR
Biosciences) and scanned using Odyssey infrared fluorescent imaging system
(LI-COR Biosciences). The band densities were analyzed using ImageJ software,
normalizing using the densities of the loading control obtained by reprobing the
membranes for Actin. All fifteen samples were run on the same blot. Differences
between groups were assessed using Student’s t-test.
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3

Western Blot Protein Detection

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Whole cell lysates were prepared by adding 2X SDS-PAGE buffer to cells.
After denaturation proteins were separated by SDS-PAGE and transferred onto a
nitrocellulose membrane (Bio-Rad) at 400mA for 4 hours. Membranes were blocked
with 2% non-fat dry milk in TBS for 1 hour, followed by exposure to primary
antibodies at 4°C overnight. After subsequent exposure to secondary
antibodies, membranes were washed 3 times with TBS/0.1% Tween-20 solution. The
proteins were visualized with enhanced chemiluminescence (ECL) solution using a
chemiluminescence imaging system (BioRad).
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4

Yeast Protein Extraction and Western Blot

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Cells were grown at 30ºC in YPA medium (1% yeast extract, 2% bactopeptone, 0.002% adenine) supplemented with 2% dextrose (Sherman 1991) to an OD 660 of 1.0 to 1.5. For each sample, 1.0 OD of cells was collected, and protein lysate was prepared by pulverizing cells with glass beads in sodium dodecyl sulfate (SDS) buffer. Standard methods for sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) were used. A nitrocellulose membrane (Bio-Rad) was used for western transfer with standard methods. Immunoblots were incubated with a 1:5,000 dilution of mouse monoclonal antibody to the V5 epitope SV5-Pk1; Abcam) or a 1:10,000 dilution of mouse monoclonal antibody to Pgk1 (Invitrogen), followed by a 1:10,000 dilution of sheep anti-mouse antibody conjugated to horseradish peroxidase (HRP) (GE Biosciences). Antibody signals were detected with Super Signal West Dura Chemiluminescent Substrate (Thermo Scientific).
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5

Protein Expression Analysis via Western Blot

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Proteins were extracted inlysis bufferaccording to the manufacturer's protocol. Lysates were separated by SDS-PAGEand transferred to anitrocellulose membrane (Bio-Rad, USA).The membranes were incubated in blocking buffer.Themembranes were incubated with the AdipoR2 (Abcam, USA), AMPK, phosphorylated (Thr172) AMPK (p-AMPK), mTOR, phosphorylated (Ser2448) mTOR (p-mTOR),70-kDa ribosomal protein S6 kinase(S6K), phosphorylated(Thr421/Ser424) p70S6 kinase (pS6K), and S6 ribosomal protein (S6P), phosphorylated(Ser240/244) S6 ribosomal protein (pS6P)and GAPDH (CST, USA) primary antibodyat 4 °Covernight, respectively. Immunoreactivity was visualizedwith horseradish peroxidase-conjugated goat anti-rabbit antibody (Bioworld, USA). Protein bands were detected and imaged with ChemiDocXRS + gel imaging system (Bio-Rad, USA)and analyzed bydensitometric quanti cation using Image J software.
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