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7 protocols using fsl 1

1

Murine Neuron Culture and RNA-seq

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phKCs (Lonza) were cultured in KBM‐Gold medium supplemented with KBM‐Gold SingleQuot KC (Lonza) for 3 days before use.10 Murine neurons were isolated from postnatal d5 C57BL/6 mice after deep anesthetization. The ganglia were digested and cultured in DMEM supplemented with 5% (v/v) FBS (Sigma), 100 U/ml penicillin, 100 μg/ml streptomycin, 1 × B27, and 50 ng/ml nerve growth factor (Sigma). Seven days of culture in the presence of 10 µM cytosine β‐d‐arabinofuranoside (Sigma) enriched >95% neurons characterized by NeuN staining. For RNA‐seq, neurons were incubated with a medium with either Pam3CSK4 (1 µg/ml, Novus), FSL‐1 (1 µg/ml, Sigma), Serpin E1 (20 µg/ml, Raybiotech), or the appropriate vehicle for 6 h.
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2

Oral Tolerance Induction by OVA Feeding

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Mice were provided with 4 mg/mL OVA in drinking water or drinking water alone ad libitum for 7 days. Prior to immunization (day −2), all mice were returned to normal water (Fig. 1a). At this dose, BALB/c mice consumed on average 13.75 mg ± 0.79 SEM of OVA/mouse/day (n = 8).
All groups were immunized i.p. (day 0) with 50 μg (C57BL/6 mice) or 10 μg (BALB/c mice) of OVA precipitated to alum (Fig. 1a) and boosted by i.p. injection of 10 μg (C57BL/6 mice) or 1 μg (BALB/c mice) soluble OVA in PBS on day 14. Blood and faecal samples were harvested on day 21. In studies examining the role of TLR activators on tolerance, mice were additionally treated with OVA gavage (1 mg in 100 μL PBS) 3 times during the week of ad libitum OVA treatment (days −9, −6, and −3) to ensure precise, concurrent delivery of OVA and TLR activators (Fig. 3a). In some groups, OVA gavage treatments were supplemented with one of the following: 10 μg TLR2/1 activator Pam3CSK4, 5 μg TLR2/6 activator FSL‐1, or 10 μg TLR4 activator LPS derived from E. coli (Sigma‐Aldrich, catalogue number L4524). These groups were compared to tolerized mice receiving 3 gavage treatments of OVA in PBS alone, and control mice receiving 3 gavage treatments of PBS. Oral treatment with FSL‐1 was performed at a 5‐μg dose due to toxic effects observed at higher doses.
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3

Bacterial Agonist-Induced PBMC Cytokine Response

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1x106 cryopreserved PBMC were thawed, washed, and then stimulated with a bacterial agonist cocktail or left unstimulated. The bacterial agonist cocktail consisted of a combination of 2ug/mL Pam3CSK4 (TLR1/2 agonist, InvivoGen), 1ug/mL FSL-1 (TLR2/6 agonist, Sigma Aldrich), and 1ug/mL LPS (TLR4 agonist from E. coli 0111: B4, InvivoGen). Samples were cultured for 1 hour before adding protein transport inhibitor (Brefeldin A) and incubated for an additional 7 hours at 37C. Cells were then washed twice in FACS buffer and surface stained using the following antibody cocktail – CD14 (M5E2, Biolegend) and HLA-DR (L243, Biolegend) for 30 minutes at 4C. Stained cells were then fixed and permeabilized using Fixation buffer (Biolegend) and incubated overnight with a cocktail of intracellular antibodies – IL-6 (MQ2-6A3, Biolegend), and TNFɑ (Mab11, eBioScience). Samples were then acquired on the Attune NxT acoustic focusing cytometer (Life Technologies). Data were analyzed using FlowJo v10 (TreeStar, Ashland, OR USA).
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4

Myeloid Progenitor Differentiation Assay

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1×103 sorted CD34+ cells/well were plated in a 96-well plate in 100uL StemSpan SFEM Media supplemented with StemSpan Myeloid Expansion Supplement II containing TPO, SCF, Flt3, GM-CSF, M-CSF and incubated at 37C in a 5% CO2 environment. On culture day 4, the volume of the cultures was brought up to 200uL with the same media. On culture day 7, the cultures were incubated with or without a bacterial agonist cocktail (2ug/mL Pam3CSK4 (TLR1/2 agonist, InvivoGen), 1 ug/mL FSL-1 (TLR2/6 agonist, Sigma Aldrich), and 1 ug/mL LPS (TLR4 agonist from E. coli O111:B4, InvivoGen)) for 6 hours. Supernatants were collected and stored short-term at −80C. The cells were further stained with an antibody cocktail of: CD34 (Biolegend, 561, PE-Cy7), CD14 (Biolegend, M5E2, AF700), HLA-DR (Biolegend, L243, APC-Cy7), CD11C (Invitrogen, 3.9, PE-eFluor610), CD115 (Biolegend, 9-4D2-1E4, PE), and CCR2 (R&D, 48607, PerCP-Cy5.5). All samples were acquired with an Attune NxT Flow Cytometer (ThermoFisher Scientific, Waltham, MA) and analyzed using FlowJo software (Ashland, OR).
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5

Rv3131 Interacts with TLR2/TLR4

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Interaction of Rv3131 with TLR2/TLR4 was analysed using HEK-Blue 293 hTLR-2 and hTLR-4 engineered cell lines (HEK-Blue™-hTLR-2/hTLR-4, InvivoGen, San Diego, US) which are co-transfected with TLR2/TLR4 and SEAP reporter gene (secreted embryonic alkaline phosphatase). Stimulation of TLR2/TLR4 ligands activates NF-κB and AP-1 which in turn induces the production of SEAP that can be readily assessed with HEK-Blue™ detection medium (with colour change from pink to purple) by measuring spectrophotometrically36 (link). Different concentrations of rRv3131 (10–200 ng) was added to approximately 50,000 HEK-Blue 293 hTLR2 and 25,000 HEK-Blue 293 hTLR4 cells respectively. Another His-tagged recombinant protein, Rab5 was used as negative control and Mycoplasma salivarium derived synthetic lipoprotein FSL-1 (10 ng) (Sigma, USA) and LPS (100 ng) were used as positive controls. The intensity of colour formation was measured in an ELISA plate reader (Infinite® 200 PRO - Tecan) at 620 nm.
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6

TLR Agonists Induce Cytokine Response

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The Ali-cultured immortalized STEC line and primary STECs were exposed to Toll-like receptor (TLR) agonists (Sigma), including 0.1 μg/ml FSL-1 (a synthetic diacylated lipoprotein; TLR2/6 ligand), 100 ng/ml LPS (purified lipopolysaccharide from Salmonella enterica subsp. enterica serovar Minnesota; TLR4 ligand), and 25 μg/ml poly I:C (synthetic analog of double-stranded RNA; TLR3 ligand). Cellular supernatants were collected from each well 24 h post stimulation and stored at below − 70 °C until analysis. Cytokine analysis was carried out with tumor necrosis factor alpha (TNFα) and interleukin-1 beta (IL-1β) ELISA kits (Abcam) according to the manufacturer’s instructions. Data are presented as the ratios of treated vs control cells for each stimulant in immortalized vs primary cells, and given as the mean +/− SD of three experiments, each done in triplicate (n = 9).
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7

TLR2 Activation by Vaginal Bacteria

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HEK-hTLR2 cells were plated at 7.5 × 104 cells/well in 96-well plates containing DMEM + 10% heat-inactivated FBS without antibiotics. The next day, the cells were treated with either live L. crispatus or G. vaginalis (104–106 CFU/well) or 10% (v/v) bacteria-free supernatants (107–105 CFU/mL culture density) in DMEM cell culture media for 24 h. In additional experiments, the cells were pre-treated with the TLR2 neutralizing antibody, anti-hTLR2-IgA (InvivoGen), for 1 h prior to exposure to live bacteria or supernatants. In these experiments, the TLR2 agonist FSL-1 (10 ng/mL, Sigma-Aldrich, St. Louis, MO) was used as a positive control for antibody efficacy. For detection of a nuclear factor kappa-B (NF-κB) response (SEAP reporter), cell culture supernatants were incubated with QUANTI-Blue solution (Invivogen) for 1 h, pictures were taken of the plate, and absorbance was read at 630 nm on a SpectraMax i3x plate reader (Molecular Devices). For detection of an IL-8 response (Lucia luciferase reporter), cell culture supernatants from the same experiment were combined with QUANTI-Luc solution (Invivogen), and luminescence was read immediately on a SpectraMax i3x plate reader. Additionally, cell culture supernatants were used in cell death assays as described below.
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