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5 protocols using anti integrin α4

1

Integrin α4 and β-Actin Protein Analysis

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One million cells were washed twice in cold PBS and lysed on ice in M-PER buffer (ThermoFisher Scientific, Rockford, IL) supplemented with a 1% protease inhibitor cocktail (Pierce, Rockford, IL). Proteins were separated by SDS-PAGE and electro-transferred to PVDF membrane (Invitrogen, Carlsbad, CA). We used anti-Integrin α4 (Cell Signaling Technology, Danvers, MA) and β-Actin (C-4) (Santa Cruz Biotechnology, Santa Cruz, CA) as primary antibodies to reveal those proteins. Alkaline phosphatase conjugated anti-rabbit secondary antibody solution (ThermoFisher Scientific, Rockford, IL) was used to detect the primary antibodies.
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2

Western Blot Analysis of EV Markers

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MSC-exos, cells and kidney tissues were lysed in RIPA lysis buffer (ThermoFisher) and the protein concentration was detected using BCA assay (ThermoFisher). Protein samples were subjected to Bis-Tris Gel (Invitrogen) and transferred onto PVDF membranes (Millipore). Membranes were blocked in NcmBlot blocking buffer (NCM Biotech) for 10 min and incubated overnight with primary antibodies as follows: anti-CD9 (ab92726, Abcam), anti-CD63 (sc-5275, Santa Cruz), anti-Tsg101 (sc-7964, Santa Cruz) anti-Alix (sc-53540, Santa Cruz), anti-GM130 (12480, Cell Signaling Technology), anti-CD44 (ab189524, Abcam), anti-ICAM-1 (MA5407, Invitrogen), anti-VCAM-1 (39036, Cell Signaling Technology), anti-LFA-1 (ab13219, Abcam), anti-integrin α4 (8440, Cell Signaling Technology), anti-integrin β1 (sc-374429, Santa Cruz), anti-PCNA (sc-56, Santa Cruz), anti-CDK1 (sc-54, Santa Cruz), anti-caspase-3 (ab13847, Abcam), anti-Cyclin B1(4138, Cell Signaling Technology), anti-p53 (2524, Cell Signaling Technology), anti-Bcl-2 (sc-7382, Santa Cruz), and anti-Bax (sc-20067, Santa Cruz). Secondary antibodies were used for detection by an ECL advanced system (GE Healthcare). Intensity values expressed as the relative protein expression were normalized to β-actin (AB2001, Abways) or GAPDH (AB2000, Abways).
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3

Western Blot Analysis of Immune and Adhesion Markers

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The protein lysates from the cells and kidney tissues were prepared following standard protocols, and the protein content was determined using the BCA protein assay kit (ThermoFisher). And then the proteins samples were separated by Bis-Tris Gel (Invitrogen) and transferred onto PVDF membranes (Millipore) using a wet- transfer system. Membranes were blocked in 5% BSA in TBS-T for 1 h at room temperature and were incubated with primary antibodies overnight at 4 °C. Then membranes were washed and incubated with secondary horseradish peroxidase-conjugated antibodies for 2 h at room temperature, and the signals were detected using an ECL advanced system (GE Healthcare). Intensity values expressed as the relative protein expression were normalized to β-actin. Primary antibodies used were anti-CD68 (ab955, Abcam); anti-F4/80 (ab6640, Abcam); anti-CD206 (ab64693, Abcam); anti-actinin 4 (15145, Cell Signaling Technology); anti-integrin α4 (8440, Cell Signaling Technology); anti-integrin β1 (4706, Cell Signaling Technology); anti-integrin αL (ab186873, Abcam); anti-integrin β2 (ab185723, Abcam); anti-NF-κB p65 (8242, Cell Signaling Technology); anti-NF-κB p-p65 (3033, Cell Signaling Technology); anti-GR (12041, Cell Signaling Technology); anti-β-actin (ab8226, Abcam). Secondary HRP-conjugated antibodies used were anti-mouse IgG, anti-rabbit IgG, and anti-rat IgG (Abcam).
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4

Western Blot Analysis of EMT Markers

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Protein was extracted from the cells and quantified as described previously [18, 19] . Equal amounts of protein were separated by electrophoresis on sodium dodecyl sulfate polyacrylamide gel electrophoresis gels, then transferred to polyvinylidene fluoride membranes. The membranes were blocked with 5% nonfat milk in TTBS (10 mM Tris-HCl pH 7.4, 100 mM NaCl, 0.5% Tween-20) for 40 min at room temperature and incubated overnight at 4 °C with primary antibodies. The following primary antibodies were used: anti-LBH, anti-ZEB1, anti-ZEB2, anti-SNAIL, and anti-SLUG (Abcam); anti-integrin-α1, anti-integrin-α2, anti-integrin-α4, anti-integrin-αv, anti-integrin-β1, anti-integrin-β3, anti-integrin-β4, anti-integrin-β5, anti-E-cadherin, anti-vimentin, and anti-actin (Cell Signaling Technology, Boston, MA, USA). The membranes were washed in TTBS and incubated with secondary antibodies for 40 min. After extensive washing, the membranes were visualized using the enhanced chemiluminescence reagent. Final images were analyzed using ImageJ software.
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5

Comprehensive Immunoblotting Analysis of Cellular Proteins

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Immunoblotting procedures were as described above. Blots were incubated with rabbit, mouse or goat polyclonal primary antibodies (Santa Cruz Biotechnology, except when differently stated) as follows: anticollagen type VI alpha 1 chain (COL6A1), 1:200; anti-tenascin C (TNC), 1:1000; anti-integrin β7, 1:500; anti-integrin α4, 1:500; anti-focal adhesion kinase (FAK; Cell Signaling Technology), 1:1000; anti-Rhoassociated protein kinase 1 (ROCK1; Cell Signaling Technology), 1:1000; anti-vimentin, 1:1000; antidetyrosinated α-tubulin (de Tyr α-Tubulin; Abcam, Cambridge, UK), 1:500; anti-vinculin, 1:500; anti-citrate 12 synthase, 1:500; anti-fatty acid synthase (FASN), 1:100; anti-peroxisome proliferator-activated receptors gamma (pparγ), 1:500; anti-peroxisome proliferator-activated receptors alpha (pparα), 1:500; anti-heat shock cognate 71 kDa protein (HSC70), 1:1000; anti-myosin heavy chain 9 (MYH9), 1:500; anti-major vault protein (MVP); 1:2000; anti-ubiquitin-binding protein p62 (p62; Sigma Aldrich), 1:1000; anti-light chain 3B (LC3B; Cell Signaling Technology), 1:500; anti-Bcl-2-like protein 4 (BAX), 1:1000; anti-beclin1, 1:1000; anti-B-cell lymphoma-extra large (Bcl-xL; Cell Signaling Technology), 1:1000; anti-BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 (Bnip3) 1:1000; B-cell leukemia/lymphoma 2 (Bcl-2; Cell Signaling Technology).
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