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3 protocols using 4 6 diamidine 2 phenylindole dapi

1

Paraformaldehyde Fixation and Cryosectioning of Piglet Duodenum

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After the sacrifice of piglets, samples of proximal duodenum were immediately excised and fixed in 4% paraformaldehyde (Sigma-Aldrich) in phosphate-buffered saline (PBS) (Sigma) at 4°C for 24 h. After washing 3 times for 30 minutes in PBS, the fixed samples were successively soaked in 12.5 and 25% sucrose (Merck) for 1.5 and 12 hours, respectively at 4°C. The tissue was then embedded in Tissue-Tek compound, frozen in liquid nitrogen and sectioned into 20-μm slices using a cryostat (Leica). The sections were washed in PBS and permeabilized by bathing in PBS/0.1% Triton X-100 (Sigma) for 10 minutes. Non-specific antibody binding was blocked by incubation of the sections in PBS/3% BSA (Merck) for 1.5 hours. For protein detection, sections were incubated at RT with primary antibody (S3 Table) diluted in PBS/3% BSA. The sections were then washed 3 times with PBS and incubated with Cy3 (indocarbocyanine)-conjugated secondary antibody (S3 Table) diluted in PBS/3% BSA. Finally, the sections were washed 3 times for 10 minutes in PBS at RT and mounted using Vectashield with 4′,6-diamidine-2-phenylindole (DAPI; Vector Labs). As a negative control, some sections were prepared without incubating with primary antibody. IF was analyzed with a Zeiss LSM 510 Meta confocal microscope (Carl Zeiss, Jena, Germany) using the 60x objective.
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2

Immunofluorescence Assay for Cellular APE1

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For immunofluorescence, THP-1cells, grown on coverslips, were fixed with 4% Formaldehyde (Sigma) and permeabilized with 0.2% Triton X-100 (Sigma) [24 (link)]. After blocking with 1% goat serum (Invitrogen), cells were incubated with mouse monoclonal APE1 Ab (Thermo Fisher Scientific) and rabbit Rab5b followed by anti-mouse Ab conjugated with alexa fluor 594 (Life Technologies) and FITC-conjugated rabbit IgG. Nuclei were stained with 4, 6′-diamidine-2-phenylindole (DAPI, Vector Laboratories). For detection of extracellular APE1, cells were initially treated with 1 μg/ml rAPE1 in culture medium for 1 hr at 37 °C and fixed with 4% Formaldehyde. Following this, cells were incubated with FITC-conjugated anti-APE1 Ab (Thermo Scientific). Cell membranes were stained with wheat germ agglutinin-alexa fluor 594 conjugate (Thermo Fisher Scientific, W11262) and nuclei were stained with DAPI. Slides were observed under a fluorescence microscope (Zeiss LSM 510).
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3

Insulin-Positive Cell Cluster Characterization

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Cell clusters were obtained in 1.5 mL tubes after suspension culture for insulin staining. The cell clusters were then incubated with 4% paraformaldehyde for 15 minutes at 4 °C and washed three times in PBS at room temperature (RT). Cells were then incubated with 0.1% Triton X-100 for 10 minutes and 10% normal donkey serum for 1 hour at RT. Samples were then incubated with primary antibodies, anti-insulin (18-0067; Invitrogen), anti-OCT3/4 (5279; Santa Cruz Biotechnology), anti-SOX2 (365823; Santa Cruz Biotechnology), and anti-SSEA4 (MAB4304; Millipore Sigma) antibodies, at 4 °C overnight. The following day, cells were incubated with a secondary Cyanine3 (Jackson ImmunoResearch)-conjugated antibody for 2 hours at RT. Cells were then stained with 4′,6-diamidine-2-phenylindole (DAPI; Vector Laboratories) for nucleic acid staining. Images were obtained using a Zeiss LSM700 confocal microscope (Carl Zeiss MicroImaging GmbH).
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