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13 protocols using tms 001 c

1

Breast Cancer and Fibrosarcoma Cell Culture

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The 4T1 (ATCC CRL-2539) and E0771 (94A001,
CH3 BioSystems) breast adenocarcinoma cell lines were maintained in
Dulbecco’s modified Eagle medium (DMEM, LM-D1109, Biosera)
and Roswell Park Memorial Institute medium (RPMI-1640, LM-R1637, Biosera),
respectively, and supplemented with 10% fetal bovine serum (FBS, FB-1001H,
Biosera) and 1% antibiotics (A5955, Sigma). Cell lines were preserved
in 5% CO2 at 37 °C. MCA205 fibrosarcoma cells (SCC173,
Millipore) were cultured in RPMI-1640 (LM-R1637, Biosera) containing
2 mM l-glutamine (TMS-002-C, Sigma-Aldrich), 1 mM sodium
pyruvate (TMS-005-C, Sigma-Aldrich), 10% FBS (FB-1001H, Biosera),
1× nonessential amino acids (TMS-001-C, Sigma-Aldrich), 1% antibiotics
(A5955, Sigma), and 1× β-mercaptoethanol (ES-007-E, Sigma).
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2

Murine Breast Cancer and Fibrosarcoma Cell Culture

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4T1 (ATCC CRL-2539) and E0771 (94A001, CH3 BioSystems) mouse breast adenocarcinoma cell lines were purchased form ATCC and CH3 BioSystems, respectively. The cells were maintained at 37 °C/ 5% CO2 in Roswell Park Memorial Institute medium (RPMI-1640, LM-R1637, biosera) supplemented with 10% fetal bovine serum (FBS, FB-1001H, biosera) and 1% antibiotics (A5955, Sigma). The MCA205, mouse fibrosarcoma cell line was purchased from Millipore (SCC173, Millipore) and cultured in expansion medium consisting of RPMI-1640 (LM-R1637, biosera) supplemented with 2 mM L-glutamine (TMS-002-C, Sigma), 1 mM sodium pyruvate (TMS-005-C, Sigma), 10 % fetal bovine serum (FBS, FB-1001H, biosera), 1x non-essential amino acids (TMS-001-C, Sigma), 1% antibiotics (A5955, Sigma) and 1x β-mercaptoethanol (ES-007-E, Sigma). MCA205 cells were also maintained at 37 °C/ 5 % CO2.
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3

Culturing Fibrosarcoma and Osteosarcoma Cells

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MCA205 fibrosarcoma cells (SCC173, Millipore) were cultured in RPMI-1640 (LM-R1637, biosera) containing 2 mM L-glutamine (TMS-002-C, Sigma-Aldrich), 1 mM sodium pyruvate (TMS-005-C, Sigma-Aldrich), 10 % fetal bovine serum (FBS, FB-1001H, biosera), 1x non-essential amino acids (TMS-001-C, Sigma-Aldrich), 1 % antibiotics (A5955, Sigma) and 1x β-mercaptoethanol (ES-007-E, Sigma). K7M2-WT osteosarcoma cells (CRL2836, ATCC) were cultured in DMEM (LM-S2041, biosera) containing with 10 % FBS and 1 % antibiotics. Cells were incubated at 37 ºC/ 5 % CO2.
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4

Ferroptosis Induction in MCA205 Murine Fibrosarcoma

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Murine fibrosarcoma MCA205 cells, which are used in this study, are often used for the analysis of the immunogenicity of dead cancer cells and the development of targeted cancer immunotherapies [2] . MCA205 cells were cultured in RPMI 1640 with L-glutamine (LONZA, BE12-702F) supplemented with 10% FBS (FisherScientific, 11591821), 1% Penicillin/streptomycin (LONZA, DE17-602E), 1% Non-Essential Amino Acids (Sigma-Aldrich, TMS-001-C) and 1% Sodium-Pyruvate. Induction of ferroptosis in MCA205 cells is executed by adding 2.5µM Ras-selective lethal 3 (RSL3, Sigma-Aldrich, SML2234).
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5

Derivation and Maintenance of Mouse ESCs

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Mouse ESCs were cultured on mitomycin-C-treated mouse embryonic fibroblasts (MEFs) in six-well tissue culture plates (92006, TPP, Trasadingen, Switzerland). Mouse ESC maintenance medium was KnockOut™ Dulbecco’s modified Eagle medium [10829018, Thermo Fisher Scientific (Thermo)] supplemented with 20% HyClone™ fetal bovine plasma (SH30070.03, Cytiva), 1% 2-mercaptoethanol (ES-007-E, Merck), 1% nonessential amino acids (TMS-001-C, Merck), 1% nucleosides (ES-008-D, Merck), 1% L-glutamine (TMS-002-C, Merck), 100 U/mL penicillin-streptomycin (15140-122, Thermo), and 1,000 U/mL mouse leukemia inhibitory factor (ESG1107, Merck). Before use, 1 μM mirdametinib [PD0325901/162-25291, FUJIFILM Wako (Wako)] and 3 μM laduviglusib (CHIR-99021/TB4423-GMP, Bio-Techne) were added to mESC maintenance medium. Cells were passaged every 2 to 3 d.
For cryopreservation, CELLBANKER 1plus (CB023, Takara) was used. For thawing, 1 mL of phosphate-buffered saline (PBS, Wako, 048-29805) was added to a cryopreserved cell vial. Mouse ESCs were quickly dispersed by pipetting and transferred to 15-mL centrifuge tubes containing 9 mL of PBS. After centrifugation, the cells were suspended in mESC maintenance medium containing 1 μM PD0325901 and 3 μM CHIR-99021. The cell suspension was then seeded onto MEF feeder cells. The thawed mESCs were used for injection after more than one passage.
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6

Culturing Mouse Embryonic Fibroblasts and Stem Cells

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Mouse embryonic fibroblasts (MEFs) were derived from 13.5‐dpc embryos. MEFs were maintained in Dulbecco's modified eagle medium (DMEM) (Sigma D5671) medium supplemented with 10% (vol/vol) foetal bovine serum (FBS) (Gibco 10270‐106) and 1 mM L‐glutamine (Merck Millipore TMS‐002‐C). Embryonic stem cells (ESCs) and iPSCs were cultured on mitomycin C (Sigma M4287) treated MEFs in Embryonic stem medium (ESM) containing DMEM (Sigma D5671) supplemented with 15% (v/v) FBS (Gibco 16000‐44), 1 mM L‐glutamine (Merck Millipore TMS‐002‐C), 0.1 mM mercaptoethanol (Merck Millipore ES‐007‐E), 1% nonessential amino acid (NEAA) stock (Merck Millipore TMS‐001‐C), and 1000 U/ml leukaemia inhibitory factor (LIF) (Merck Millipore ESGRO 1107).
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7

Culturing Mouse and Drosophila Cell Lines

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Low-passage E14 mouse embryonic stem cells (mESCs) were grown in
knockout DMEM (Invitrogen, 10829-018) with 15% ESC grade FBS (EMD
Millipore, ES-009-B), 1× L-glutamine (EMD Millipore, TMS-002-C),
1× ES-grade Penicillin/streptomycin (EMD Millipore, TMS-AB2-C),
1× non-essential amino acid (EMD Millipore, TMS-001-C), 0.1%
2-mercaptoethanol, 1× Leukemia Inhibitory Factor (LIF, EMD
Millipore, ESG1107) in 37 °C, 5% CO2 incubator.
One hour prior to harvest, ∼60-70% confluency cells were
incubated with fresh mESC media. Mouse C3H10T1/2 cells were grown in the
growth media (10% FBS (Hyclone, SH30071.03), Penn/ Strep (Gibco,
15140-122), DMEM (Gibco, 11965-118)) in 37 °C, 5%
CO2 incubator. Drosophila Schneider 2 (S2)
cells were grown in growth media containing 10% heat inactivated FBS
(Hyclone, SH30071.03), Penn/Strep (Gibco, 15140-122), and
Schneider's Drosophila medium (Gibco, 21720024)) at
room temperature in ambient CO2.
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8

Culturing Yeast, Caulobacter, and Mouse ESCs

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Strains used in this paper are listed at the Experimental Models:
Organisms/Strains in the KEY RESOURCES
TABLE
. Yeast strains were grown in YPAD medium (10 g/L yeast
extract, 20 g/L peptone, 40 mg/L adenine sulfate, and 20 g/L glucose) or
Synthetic Dextrose (SD) Medium (6.7 g/L yeast nitrogen base and 20 g/L
glucose plus appropriate amino acids drop out mix). All yeast strains were
cultured at 30 °C, unless specified. Samples were harvested at log
phase (OD600 = ∼0.8). Caulobacter
crescentus:
NA1000 and its derivatives were grown in
PYE rich medium (1 g/L yeast extract, 2 g/L Bacto peptone, 1 mM
MgSO4, 0.5 mM CaCl2) at 28°C. Mouse
embryonic stem cells (ESCs):
E14 ESCs (male) (Hooper et al., 1987 ) were cultured in knockout
DMEM (Invitrogen, 10829-018) with 15 % ESC grade FBS (EMD Millipore,
ES-009-B), 1× L-glutamine (EMD Millipore, TMS-002-C), 1×
ES-grade Penicillin/streptomycin (EMD Millipore, TMS-AB2-C), 1×
non-essential amino acid (EMD Millipore, TMS-001-C), 0.1 %
2-mercaptoethanol, 1× Leukemia Inhibitory Factor (LIF, EMD Millipore,
ESG1107) in a 37 °C, 5 % CO2 incubator.
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9

Maintenance of DC2.4 Mouse Dendritic Cells

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The DC2.4 mouse dendritic cell line was purchased from Millipore (# SCC142). These cells were routinely maintained at 37°C in 5% CO2 in RPMI supplemented with 10 % heat-inactivated fetal calf serum, 1 X L-Glutamine (TMS-002-C, EMD Millipore, MA, United States), 1X non-essential amino acids (TMS-001-C; EMD Millipore, MA, United States), 1X HEPES Buffer Solution (TMS-003-C; EMD, Millipore, MA, United States), 0.0054X β-Mercaptoethanol (ES-007-E; EMD Millipore, MA, United States), 100 IU/ml Penicillin and 100 μg/ml streptomycin.
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10

Cryopreservation and Lyophilization of Murine ESCs

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Example 1

Murine embryonic stem cells (ESC) were maintained feeder free with media containing 205 ml DMEM with glucose/sodium bicarbonate (Millipore, SLM-220-B), 37.5 ml ES Cell Qualified Feeder Bovine Serum (Millipore ES-009-C), 2.5 ml 100× Non-Essential Amino Acids (NEAA) (Millipore TMS-001-C), 2.5 ml L-glutamine solution (Millipore TMS-002-C), 2.5 ml 100× penicillin/streptomycin (Millipore TMS-AB2-C), and 12.5 μl Leukemia Inhibitor Factor (LIF) 10 UG (Millipore, LIF2010).

Approximately 1.0×106 ESC were suspended in 0.5 ml phosphate buffered saline with 0.1M trehalose (5) (Sigma Aldrich cat T0167) and 0.3 mg/dl EGCC (Zhejiant Yixin Pharmaceutical, Lanxi, Jinhua, Zhejiang, China) and cryopreserved at −80° C. Lyophilization was done at −80° C. and <0.008 torr using a Labconco Freezone 2.5 liter freeze dry system (Labconco Corporation, Kansas City, Mo.). Lyophilized ESC were stored at room temperature in a trehalose sugar matrix (FIG. 1).

Prior to use for injection, the sugar matrix dissolves when exposed to normal saline, leaving intact but non-viable ESC.

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