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Nis elements br v 4

Manufactured by Nikon
Sourced in Japan

Nis-Elements BR v.4.30.02 is a software application for imaging and analysis. It provides tools for image acquisition, processing, and data management. The software supports a range of microscopy techniques and imaging hardware.

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4 protocols using nis elements br v 4

1

Melatonin and 3-indolacetic Acid Modulate HUVEC Migration

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HUVECs were seeded onto 50 mm imaging dishes (Ibidi, Martinsried, Germany). When the cells achieved 100% confluence, a straight lesion was made in the center of the monolayer using a sterile 200-μL pipette tip. The wells were subsequently washed twice with PBS to remove the dead cells and incubated with EBM, containing 1 mM melatonin (final concentration of ≤0.1% DMSO), 1 mM 3-indolacetic acid (final concentration of ≤0.1% DMSO), or vehicle controls (≤0.1% DMSO) for 4 h before being treated with VEGF (25 ng/mL) for 24 h. The wounds were photographed using phase contrast microscopy on an inverted microscope (Nikon, Tokyo, Japan). Initial and final wound sizes were determined using the Nis-Elements BR v.4.30.02 software (Nikon, Tokyo, Japan), and the difference was used to determine the migration distance using the following formula; initial wound size minus final wound size divided by two. Three independent experiments were carried out.
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2

Serotonin and 5-Hydroxytryptophol Regulate HUVEC Migration

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The cell migration assay was performed following the protocol previously described in Cerezo et al. [19 (link)]. The HUVECs were placed onto 50 mm imaging dishes (Ibidi, Martinsried, Germany). Once cells reached full confluence, the monolayer was scratched across the centre using a sterile 200 μL pipette tip. Subsequently, the cells were then rinsed twice with PBS to eliminate any dead cells. Serum-free medium containing 1 mM serotonin, 1 mM 5-hydroxytryptophol or vehicle controls were added (final concentration ≤ 0.1% DMSO) for 4 h prior to VEGF stimulation (25 ng/mL) over 24 h. A phase contrast microscope (Nikon, Tokyo, Japan) was used to photograph the wound-gaps. Nis-Elements BR v.4.30.02 software (Nikon, Tokyo, Japan) was utilised to measure the initial and final sizes of each wound. The following formula was used to quantify the migration distance: initial wound size minus final wound size divided by two. Two independent experiments were performed.
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3

Visualizing Vascular Structure in Mouse Somatosensory Cortex

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Surgical procedures were performed as described above. Ringers’ solution containing fluorescein isothiocyanate-labeled serum albumin (FITC-BSA) was topically superfused over the somatosensory cortex for 30 min. The mouse was then transcardially perfused with 20 ml of phosphate-buffered saline (PBS) and 30 ml of 4% paraformaldehyde, and, after sacrificing the animal, the brain was removed and post-fixed in 4% paraformaldehyde overnight. The brain was sectioned in 50-µm-thick coronal slices through the perfusion site using a vibratome, washed in PBS, immunostained with Alexa 594-conjugated anti-smooth muscle α-actin (1:500, clone 1A4; Abcam, Paris, France) and mounted on a glass slide in a drop of Dako fluorescence mounting medium (Dako; Les Ulis, France). Stained sections were imaged with a Nikon Eclipse 80i microscope (Nikon; Champigny sur Marne, France); images were captured with an Andor Neo sCMOS camera and NIS Elements BR v 4.0 software (Nikon) using identical settings across compared groups.
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4

Quantifying Cellular and Vascular Pathology

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Stained sections were imaged with an Eclipse 80i microscope (Nikon, Champigny sur Marne, France) at × 20 (MBP analysis), × 40 (capillary analysis), or × 60 (artery analysis) magnification. Images were captured using an Andor Neo sCMOS camera and NIS Elements BR v4.0 software (Nikon), with identical settings across compared groups. The entire procedure was performed with prefixed parameters under blinded conditions.
Myelin debris spots were counted over the whole corpus callosum using a custom-made, 3-step NIH ImageJ macro, as described.19 (link) Results were expressed as the number of SMI94 hyperintense foci over the area of the corpus callosum.
Notch3ECD deposits were counted on maximal intensity projections of image stacks using ImageJ software (v1.49g; Fiji Distribution, NIH) following a semiautomated procedure that includes 3 main steps: (1) manual delineation of pial arteries on the smooth muscle α-actin channel and delineation of capillaries by automated segmentation on the perlecan channel, followed by measurement of vessel area; (2) background suppression on the Notch3ECD channel; and (3) automatic detection and counting of Notch3ECD deposits within vessel borders using a local maxima approach. Results were expressed as the number of Notch3ECD deposits over the vessel area.
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