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Sterile tube

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Sterile tubes are laboratory equipment used for the collection, storage, and transportation of samples. They are designed to maintain sample integrity and prevent contamination. Sterile tubes are available in a variety of sizes and materials to accommodate different sample types and volumes.

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8 protocols using sterile tube

1

Saliva Collection Protocol for EGD

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Saliva samples were collected before the EGD and between 7:30 am and 11:30 am Per protocol, participants were nil per os for at least 6 hours before their EGD. Upon providing informed consent and assent, participants rinsed their mouth with 5 mL of water. After a 10-minute wait period, between 4 and 7 mL of saliva (unstimulated, whole mouth fluid) was collected as spit in a sterile tube (BD Biosciences, San Jose, CA). The samples were maintained at 4 °C and transported to the laboratory within 2 hours of collection. In the laboratory, the saliva samples were centrifuged at 3,000 rpm for 15 minutes (1,419g) at room temperature to remove particulate debris, and the supernatant was stored in aliquots at −80 °C until further analysis.
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2

Preparation of Platelet-Rich Growth Factor

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Platelet concentrates were obtained as previously published [25 (link)] with minor modifications. Briefly, samples of platelet concentrates were obtained from washouts of leukocyte depletion filters intended for disposal, taken from platelet apheresis collection kits (Haemonetics MCS+ System; Haemonetics, Signy-Centre, Switzerland) after donation from healthy donors. Under a sterile biological safety hood, the filtered apheretic product was transferred to a sterile tube (BD Biosciences). Platelet activation was performed by the addition of CaCl2 at a final concentration of 0.04 M (Monico SPA, Venice, Italy) and by incubation at 40 °C for approximately 60 min, i.e., until complete clot formation. Supernatants of centrifuged samples were stored at −80 °C until analysis. To obtain SRGF batches containing consistent amounts of growth factors we created pools of 16 single-donor SRGF products [26 (link)]. The obtained product was filtered through a 0.22-μm mesh filter (Merk Millipore, Darmstadt, Germany). Sterility tests were performed by standard procedures. Two separate batches were utilized in the present work.
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3

Meningitis Diagnostic CSF Sampling

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Children suspected of having meningitis and requiring CSF examination for routine diagnostic purposes were recruited from the Tygerberg Academic Hospital in Cape Town, South Africa. Study participants were recruited between November 2016 and November 2017. Children were eligible for participation in the study if they were between the ages 3 months and 13 years, provided that written informed consent was obtained from the parents or legal guardians. Assent was obtained from children older than 7 years if they had a normal level of consciousness, i.e., a Glasgow Coma Score (GCS) of 15/15. The study was approved by the Health Research Ethics Committee of the University of Stellenbosch, Tygerberg Academic Hospital, and the Western Cape Provincial Government.
After the collection of CSF and blood samples for routine diagnostic purposes, an additional 1 ml of CSF was collected into a sterile tube (BD Biosciences). Samples were then taken to the immunology research laboratory for further processing for research purposes, within an average of 2 hours from collection. CSF samples were centrifuged in a biosafety level 3 laboratory at 4000 xg for 15 minutes, followed by aliquoting and storage at -80°C until analysed.
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4

Blood, Muscle, and Adipose Tissue Sampling

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Resting blood samples were collected by venipuncture from an antecubital vein in sterile tubes (BD Vaccutainer, Franklin Lakes, NJ) coated with ethylenediaminetetra acetic acid (EDTA) as an anticoagulant. Plasma was separated by centrifugation at 1300 rcf for 10 minutes at 4°C. Samples were stored at −80°C until analysis. Muscle biopsy samples were obtained using the Bergstrom needle biopsy technique [30] (link) with the addition of manual suction from the vastus lateralis following local anaesthetization (2% lidocaine). For each experimental visit both muscle biopsies (fasted and post-prandial) were obtained from the same leg from separate incisions approximately 2–3 cm apart. Repeated biopsies from separate incisions have been shown to be unaffected by previous biopsies to the same leg [31] (link), [32] (link). Adipose tissue biopsies were also obtained using a Bergstrom needle with the addition of manual suction following local anaesthetization (2% lidocaine). Adipose tissue biopsies were obtained from the abdomen with the incision made approximately 5 cm lateral to the umbilicus and the needle being directed laterally once through this incision. Both muscle and adipose tissue were immediately blotted, snap-frozen in liquid nitrogen, and stored at −80°C until analysis.
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5

Systemic Lupus Erythematosus Patient Profiling

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Six SLE patients and seven age- and sex-matched healthy volunteers, who visited the Department of Dermatology at the China-Japan Friendship Hospital (Beijing, China), were recruited for this study. The information relating to SLE patients is provided in Supplementary Table 1. All patients met the European League Against Rheumatism/American College of Rheumatology 2019 classification criteria for SLE.[26 (link)] Lupus disease activity was assessed using the SLE Disease Activity Index.[27 ] All samples were collected in sterile tubes (BD Biosciences, Franklin Lakes, NJ, USA) containing anticoagulants. PBMCs were obtained from 5 mL of peripheral blood and enriched by density centrifugation using a Ficoll-Paque (GE Healthcare, Uppsala, Sweden).
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6

Measuring Testosterone Levels in Blood

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Blood samples were collected in sterile tubes (BD Systems, Franklin Lakes, NJ, USA) and placed on ice immediately. A small sample of whole blood was transferred into EDTA-treated tubes (BD Systems) to be analyzed for hematocrit and hemoglobin, from which plasma volume shifts were calculated using the Dill and Costill [11 (link)] equation to account for hemoconcentration of the blood. The remaining whole blood specimens were centrifuged at 3000× g at 4 °C to separate sera. Testosterone, sex hormone-binding globulin (SHBG), and albumin were assessed with commercial analytical kits (DPC Inc., Los Angeles, CA, USA; Abcam, Cambridge, MA, USA). Additionally, free testosterone and bioavailable testosterone were calculated using procedures from Vermeulen et al. [12 (link)].
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7

Measuring Testosterone Levels in Blood

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Blood samples were collected in sterile tubes (BD Systems, Franklin Lakes, NJ, USA) and placed on ice immediately. A small sample of whole blood was transferred into EDTA-treated tubes (BD Systems) to be analyzed for hematocrit and hemoglobin, from which plasma volume shifts were calculated using the Dill and Costill [11 (link)] equation to account for hemoconcentration of the blood. The remaining whole blood specimens were centrifuged at 3000× g at 4 °C to separate sera. Testosterone, sex hormone-binding globulin (SHBG), and albumin were assessed with commercial analytical kits (DPC Inc., Los Angeles, CA, USA; Abcam, Cambridge, MA, USA). Additionally, free testosterone and bioavailable testosterone were calculated using procedures from Vermeulen et al. [12 (link)].
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8

Probiotic Growth with Maitake Extract

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The probiotic bacteria described in Table 1 were pre-inoculated in MRS broth for 48 h at 37 °C in anaerobic conditions before the setup of the experiment. Maitake extract powder was added to mMRS and then sterilized together before inoculation, to a final concentration of 2% w/v.
The consortium was prepared in a sterile tube, mixing the selected probiotic in order to achieve an OD at 600 nm of 0.1. After the homogenization, the proper volume of the consortium (around 200 μL) was inoculated in sterile tubes (BD, Milano, Italia) with a final volume of 10 mL. Each tube contained only mMRS as a control or mMRS plus Maitake extract. After the inoculum, the tubes were placed in an anaerobic jar and then incubated for 48 h at 37 °C. The growth was evaluated as optical density at 600 nm.
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