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Invitrogen platinum 2 hot start green pcr master mix 2x

Manufactured by Thermo Fisher Scientific
Sourced in United States

Invitrogen Platinum II Hot-Start Green PCR Master Mix (2X) is a ready-to-use, pre-formulated solution that contains all necessary components for performing PCR reactions, including a hot-start DNA polymerase, dNTPs, and a green fluorescent dye for visualization. The master mix is designed to provide efficient and reliable DNA amplification.

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3 protocols using invitrogen platinum 2 hot start green pcr master mix 2x

1

Detection and Genotyping of High-Risk HPVs and EBV

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The detection and genotyping of high-risk HPVs (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, and 58) and EBV were performed as previously described [22 (link)]. In addition, PCR was performed for MMTV-like virus (forward primer: 5′-GATGGTATGAAGCAGGATGG-3′ and reverse primer: 5′-CCTCTTTTCTCTATATCTATTAGCTGAGGTAATC-3′). For all reactions, GAPDH was used as an internal control. Analyses were completed as illustrated earlier [22 (link)]. The Invitrogen Platinum II Hot-Start Green PCR Master Mix (2X) (Thermo Fisher Scientific, Waltham, MA, USA) was used to perform PCR. Briefly, the MMTV-like virus gene was amplified for an initial denaturation at 94°C for 2 min, followed by 40 cycles of 94°C for 30 s, 54°C for 30 s, and 72°C for 30 s. The samples were finally incubated for 10 min at 72°C for a final extension. HPV and EBV genes were amplified as described previously [22 (link)]. The PCR product was resolved using 1.5% agarose gel electrophoresis. For each experiment performed, respective positive and negative controls were used; positive control for HPV included normal oral epithelial cell line expressing E6/E7, for EBV diluted DNA plasmids for EBV nuclear antigen 1 and LMP1, while for MMTV-like virus, we used MDA-MB-231 as the positive control [35 (link)]. Nuclease-free water instead of DNA was used for the negative control [15 (link)].
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2

High-Risk HPV Detection by PCR

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Polymerase chain reaction (PCR) was performed to analyze HR HPVs in purified genomic DNA, through the use of primers specific to HR HPV types: 16, 18, 31, 33, 35, 45, 51, 52, and 59, as previously described [46 (link),47 (link)]. For the internal control, GAPDH was used. All analyses were completed as described by our group [46 (link)]. For each single experiment, we used the respective positive and negative controls reported by our group previously [47 (link)].
PCR was performed using the Invitrogen Platinum II Hot-Start Green PCR Master Mix (2X) (ThermoFisher Scientific, Waltham, MA, USA) according to the manufacturer’s protocol. Gel electrophoresis was performed to resolve the PCR product, and images were captured using the iBrightCL1000 Imaging System (ThermoFisher Scientific, Waltham, MA, USA).
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3

Genotyping of High-Risk HPV and EBV

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Genotyping and detection of the presence of HPV and EBV was done using primers specific for high-risk HPV types (16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59, 66 and 68) of the E6/E7 region and for EBV genes, EBNA1 and LMP1 as previously described [39 (link), 40 (link)]. GAPDH was used as an internal control. Analysis was performed as previously described by our group [39 (link), 40 (link)].
PCR was performed using the Invitrogen Platinum II Hot-Start Green PCR Master Mix (2X) (ThermoFisher Scientific, USA) as described previously [35 , 39 (link), 40 (link)]. HPV and EBV genes were amplified for an initial denaturation at 94 °C for 2 min followed by 40 cycles of 94 °C for 30 s, annealing at temperatures ranging from 50 to 62 °C for 30 s depending on each primer’s melting temperature as previously described [39 (link), 40 (link)], and 72 °C for 30 s with a final incubation of 10 min at 72 °C. The PCR product from each exon was resolved using 1.5% agarose gel electrophoresis and visualized using iBrightCL1000 Imaging System (ThermoFisher Scientific, USA). In each experiment, negative control (instead of DNA, MDA-MB-453 cell line [41 (link)] and sterile water) and positive control (Hela cell line for L1 region [42 (link)] and normal oral epithelial (NOE) cell line expressing E6/E7 of HPV type 16 for E6/E7 region [43 (link)]) were used.
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