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61 protocols using sb202190

1

Preparation and Treatment of Peritoneal Macrophages and HT-29 Cells

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Peritoneal macrophages were prepared as described previously (Zhang et al. 2021b (link)) and were cultured in RPMI 1640 medium supplemented with 10% FBS (SH30071.03, HyClone, USA), 100 units/mL of penicillin, and 100 μg/mL of streptomycin. 2 μg/mL of LT [2 μg/mL of LF (172C, List Biological Labs) and 2 μg/mL of PA (171E, List Biological Labs)] was used to treat peritoneal macrophages for 3 h. HT-29 cells of indicated genotypes were cultured in DMEM supplemented with 10% FBS (10099-141, Gibco, USA), 100 units/mL of penicillin, and 100 μg/mL of streptomycin. 2 μg/mL of LT, 30 ng/mL of human TNF (PHC3011, Gibco), and 10 μmol/L of LCL-161 were used to induce cell death in HT-29 cells. Inhibitors used in this study were 2 μmol/L of SB202190 (S1077, Selleck, USA), 2 μmol/L of SB203580 (559389, Calbiochem), 2 μmol/L of TAK-715 (HY-10456, MedChemExpress), 2 μmol/L of U0126 (S1102, Selleck), 2 μmol/L of GDC-0994 (S7554, Selleck), and 10 μmol/L of SP600125 (S5567, Sigma–Aldrich, USA).
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2

Synthesis and Characterization of Ligand-Metal Complexes

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The synthesis of the ligands and complexes was performed according to the protocol described by Sgarbossa and co-workers [18 (link)]. Complexes and ligands were dissolved in DMSO as a 10 mM stock solution and stored at room temperature. SB202190, AZD6244, and SP600125 were purchased from Selleck Chemical (Houston, TX); they were dissolved in DMSO as a 20 mM stock solution and stored at −20 °C. Vanadyl sulfate (VOSO4), 4’,6-diamidino-2-phenylindole (DAPI), Mowiol® 4-88, RNase, propidium iodide, EDTA, protease inhibitor cocktails, and monoclonal anti-β-actin antibody were purchased from Sigma-Aldrich (St. Louis, MO). VOSO4 was freshly dissolved in medium. DMEM, DMEM-F12, RPMI 1640, and fetal bovine serum (FBS) were purchased from Aurogene (Rome, IT). EGF, insulin, hydrocortisone, penicillin/streptomycin antibiotic mixture, amphotericin B, and glutamine were purchased from Sigma-Aldrich (Milan, IT).
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3

Melanoma Cell Line Cultivation and Drug Preparation

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All melanoma cell lines were obtained from the Massachusetts General Hospital Cancer Center. C32, K2, MMACSF, SKMEL28, and WM115 cell lines were grown in DMEM/F12 (Invitrogen) supplemented with 5% fetal bovine serum (FBS) and 1% sodium pyruvate (Invitrogen). COLO858, LOXIMVI, MZ7MEL, RVH421, and WM1552C cell lines were grown in RMPI 1640 (VWR) supplemented with 5% fetal bovine serum (FBS) and 1% sodium pyruvate (Invitrogen). We added penicillin (50 U/ml) and streptomycin (50 μg/ml) to all growth media.
Chemical inhibitors from the following sources were dissolved in dimethyl sulfoxide (DMSO) as 10 mM stock solutions for in vitro studies: vemurafenib (PLX4032), PLX4720, SB590885, selumetinib (AZD6244) and AZ628 (all from MedChem Express), JNK-IN-8 (EMD Millipore), SP600125, doramapimod (BIRB796), and SB202190, GDC0941, tofacitinib (CP-690550), and IKK16 (all from Selleck Chemicals).
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4

Inhibition of Giardia Pathways

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COX-2 inhibitor NS398 (50 μM, final concentration), p38 inhibitor SB202190 (10 μM), ERK1/2 inhibitor SCH772984 (10 μM), and NF-κB inhibitor JSH-23 (50 μM) (Selleckchem, Houston, USA), as well as ROS inhibitor NAC (10 μM; APEXBIO, Houston, USA) were used to inhibit target proteins in this study. All inhibitors were applied 1 h prior to Giardia exposure.
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5

Prostate Cancer Cell Line Cultivation

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LNCaP, MDA-PCa-2b, and PC3 cell lines were acquired from ATCC (Manassas, VA, USA). PC3 and LNCaP cells lines were cultured in 10% fetal bovine serum (FBS), RPMI 1640, and 1% antibiotic-antimycotic. The MDA-PCa-2b cell line was cultured in BRFF-HPC1 media purchased from AthenaES (Baltimore, MD, USA) supplemented with 20% FBS. Dihydrotestosterone was acquired from Sigma-Aldrich (St. Louis, MO, USA). Androgen depleted media consisted of 10% charcoal stripped FBS with phenol red free RPMI 1640. Docetaxel was acquired from Sigma-Aldrich. Temsirolimus and SB202190 were purchased from Selleckchem (Houston, TX, USA). All other inhibitors were purchased from EMD Millipore (Billerica, MA, USA). Unless otherwise stated all other cell culture reagents were acquired from Invitrogen (Grand Island, NY, USA).
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6

Osteoclast Differentiation Protocol

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α‐Minimum essential medium (α‐MEM) and foetal bovine serum (FBS) were obtained from Gibco; Thermo Fisher Scientific, Inc. Soluble recombinant mouse macrophage‐colony stimulating factor (M‐CSF) and recombinant mouse RANKL were obtained from R&D Systems, Inc. Tartrate‐resistant acid phosphatase (TRAP) was obtained from Sigma‐Aldrich and Merck KGaA. High purity Ti particles (average diameter. 1‐5 µm) were obtained from Johnson Matthey (cat. no., 00681). The antibodies (GAPDH, NFkB, C‐FOS, NFATc1, p‐p38,) were purchased from Cell Signaling Technology, Inc. Enzyme‐linked immunosorbent assay (ELISA) kits (IL‐6, IL‐1β, TNF‐α, IL‐10, Arg‐1, iNOS) were purchased from R&D Systems, Inc Flow cytometry anti‐mouse CD16/32‐PE (cat. no.553145) and anti‐mouse CD206‐Alexa 647 (cat. no.565250) were purchased from BioLegend Inc The p38α/β MAPK inhibitor (SB202190) was purchased from Selleck.
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7

Inhibition of MAPK Signaling Pathways

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COX-2 inhibitor NS398 (50 μM), p38 MAPK inhibitor SB202190 (FHPI) (10 μM), and ERK1/2 MAPK inhibitor SCH772984 (10 μM), was purchased from Selleck Chemicals (Houston, United States). TLR4 inhibitor TAK-242 (10 μM) was purchased from APEXBIO Technology (Houston, United States). Cells were separately pretreated with these drugs at the indicated concentrations for 1 h at 37°C. At the time of the second addition of gentamicin, the inhibitors were also added, and the point was defined as time 0. Cells treated with TAK-242 were collected at 1 h after infection to detect the protein level of phosphorylated and unphosphorylated ERK1/2 MAPK and p38 MAPK, and at 6 h after infection to determine the COX-2 expression level. ERK1/2 inhibitor SCH772984 and p38 MAPK inhibitor SB202190 (FHPI) treated cells were collected at 6 h after infection to detect COX-2 expression level. NS398 treated cells were collected at 6 h and 9 h after infection to detect reactive oxygen species (ROS), cell death, and cytokine expression levels. NS398 treated cells were collected at 6 h after infection to investigate the LC3 expression level. These experiments were performed in triplicate with three biological repetitions.
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8

Hepatocyte Culture Optimization Protocol

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Rat tail type I collagen, Transwell inserts (0.9 cm2 cell culture area, 1.6 × 106 pores/cm2), 12-well polystyrene tissue culture dishes, 12-well polycarbonate plates and Transwell inserts (1.12 cm2 cell culture area, 1.6 × 108 pores/cm2) were purchased from Corning (Corning, NY). SB202190 was from Selleckchem (Houston, TX). Collagenase (type IV) was purchased from Worthington Biochemicals (Lakewood, NJ). Y-27632 and N-[N-(3,5-difluorophenacetyl)-L-alanyl]-S-phenylglycine t-butyl ester (DAPT) were purchased from ApexBio Technology (Houston, TX). Human collagen (type I) was obtained from Advanced Biomatrix (Carlsbad, CA). The ALP assay kit was from AbCam (Cambridge, MA). Gastrin was from Anaspec (Freemont, CA). UGT-Glo™ Assay and P450-Glo™ CYP3A4 Assay were obtained from Promega (Madison, WI). N-acetyl cysteine was purchased from MP Biomedicals (Santa Ana, CA). Murine EGF was procured from Peprotech (Rock Hill, NJ). Primocin was purchased from InvivoGen (San Diego, CA). Nicotinamide, L-alanine p-nitroanilide, fluorescein diacetate, loperamide, zafirlukast, cobalt chloride, potassium phosphate buffer, bovine serum albumin, and A83–01 were acquired from Sigma-Aldrich (St. Louis, MO). All other reagents and Bicinchoninic Acid (BCA) Protein Assay Kit were purchased from Thermo Fisher Scientific (Waltham, MA).
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9

Inhibition Assay Protocol

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For inhibition assays, the following inhibitors and final concentrations were used: SP600125 1μM, SB202190 1μM, PD0325901 0.5μM, and trametinib 1-10μM (Selleck Chemicals, Houston, TX). Inhibitors were added at the stated concentrations to CLL-PBMC culture every 96 hours.
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10

Trophoblast Cell Line Maintenance and Manipulation

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Human trophoblast cell line HTR8/SVneo was maintained as described25 (link). Additional human trophoblast cell line Sw.71 was kindly provided by Dr. Gil Mor (Yale University), and maintained as described previously29 (link). In siRNA experiments, cells were transfected with the siRNAs (ThermoFisher) shown in Online Supplemental Materials and Methods using siPORT Amine transfection reagent as previously described24 (link). Control siRNA was purchased from GE Dharmacon (ON-TARGETplus Non-targeting Control siRNA). For reconstitution experiments, cells were first transfected with siRNA targeting endogenous ApoER2, and subsequently the cells were transfected with adenoviral particles (1010 particles/ml) encoding ApoER2 constructs24 (link). Twenty-four hours after adenoviral transfection, experiments were performed. Pharmacological inhibition studies were performed using HIF1α inhibitor (1μM, GN44028, TOCRIS), MMP14 inhibitor (10nM, NSC405020, Sigma-Aldrich), or p38 inhibitor SB 202190 (10 μM, Selleckchem) in the presence of NHIgG or aPL (100 μg/ml).
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