The largest database of trusted experimental protocols

Photodiode array detector

Manufactured by Shimadzu
Sourced in Japan, United States

The Photodiode array detector is an analytical instrument used in various analytical techniques, such as high-performance liquid chromatography (HPLC) and spectrophotometry. It is designed to detect and measure the spectral characteristics of analytes separated during the analytical process. The detector utilizes an array of photodiodes to simultaneously measure the absorption of light at multiple wavelengths, providing a comprehensive spectral profile of the sample.

Automatically generated - may contain errors

19 protocols using photodiode array detector

1

HPLC Analysis of Plasma MDA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Plasma malondialdehyde (MDA) was determined using high performance liquid chromatography (HPLC) with photo diode array detector (Shimadzu, Japan) as described by Pilz et al. [27 (link)] with some modifications. Briefly, samples (50 μL) were mixed with 200 μL of 1.3 M NaOH and incubated at 60°C for 60 min. After cooling the mixture, 100 μL of 35% HCIO4 was added and centrifuged at 10,000 g for 10 min at 4°C. The supernatant of the samples (300 μL) was transferred into 1.5 mL of HPLC tube. 50 μL of 5 mM DNPH solution was added into the mixture and incubated for 30 min at room temperature. Then, 40 μL samples were injected into the HPLC. The amount of MDA is expressed as concentration of MDA in nmol per mL plasma.
+ Open protocol
+ Expand
2

Pry1CAP Characterization by SEC

Check if the same lab product or an alternative is used in the 5 most similar protocols
For SEC experiments, 20 μg of Pry1CAP was injected onto a Yarra SEC-2000 column (Phenomenex, Torrance, CA) at flow-rate of 0.5 ml/min with a Shimadzu Prominence series HPLC (Kyoto, Japan) using PBS pH 7.4 as the mobile phase. The elution was monitored with a photo diode array detector (Shimadzu). The system was calibrated using Bio-Rad gel filtration standard (Hercules, CA) consisting of proteins with molecular weights of 670, 158, 44, 17 and 1.35 kDa. Data analysis was performed on the 280 nm wavelength extracted chromatograph using Shimadzu LCsolution version 1.25. Experiments were conducted in triplicate.
+ Open protocol
+ Expand
3

NMR and Mass Spectrometry Analysis of Fatty Acids

Check if the same lab product or an alternative is used in the 5 most similar protocols
1H, 13C, and 2D NMR data were collected using a Varian Inova 500 MHz spectrometer equipped with a 3 mm NMR probe using residual solvent signals for referencing. Low-resolution ESIMS was done using a Shimadzu 8040 through direct injection in 50% MeOH:H2O with 0.1% formic acid. High-resolution MS (HRMS) data were obtained using Waters Xevo G2 XS QTOF through direct infusion using 50% aqueous ACN with 0.1% formic acid. HPLC purification was done using a Shimadzu High-Performance Liquid Chromatograph (HPLC) equipped with binary pumps, fraction collector, and photodiode array detector (Shimadzu Kyoto, Japan). Fatty acids palmitic (4) and stearic acids (5) were sourced from Sigma-Aldrich (St. Louis, MO, USA). (±) trans-12,13-epoxy-octadecanoic acid (6) and 12(Z)-octadecenoic acid (7) were purchased from Larodan Fine Chemicals (Solna, Sweden).
+ Open protocol
+ Expand
4

Spectroscopic Analysis of Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
Optical rotation was measured in a PerkinElmer PE-343 polarimeter. UV/vis absorption data were obtained on a Hitachi U4100 spectrophotometer. 1H, 13C, and 2D data were collected using a Varian Inova 500 MHz spectrometer equipped with a 3 mm Nalorac MDBG probe using tetramethylsilane as internal standard. HRESIMS data were collected using an Agilent QTOF 6500 series mass spectrometer. HPLC purification was done using Shimadzu high-performance liquid chromatography (HPLC) equipped with binary pumps and a photodiode array detector (Shimadzu Kyoto, Japan).
+ Open protocol
+ Expand
5

Alkaloid Extraction and HPLC Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The experimental plant materials, including the leaves, stems, roots, transgenic root cultures, and control root cultures, were thoroughly dried at 40°C and then ground into a fine powder for use in the extraction of alkaloids (Xia et al., 2016 (link)) and their HPLC analysis (Wang et al., 2011 (link)). This alkaloid analysis was performed on the LC-20A system of HPLC with a photo-diode array detector (Shimadzu, Kyoto, Japan), while a CTP-ODS column (Phenomenex, Torrance, CA, United States) was used at 40°C with a 226-nm detecting wavelength. A sample of 20 μl was injected each time. The authentic samples included the hyoscyamine and scopolamine, as purchased from Sigma–Aldrich (St. Louise, MO, CA, United States).
+ Open protocol
+ Expand
6

Quantification of Tyrosine, p-Coumaric Acid, and Naringenin

Check if the same lab product or an alternative is used in the 5 most similar protocols
For tyrosine quantification, culture samples were first centrifuged at 10,000 rpm and the supernatants were filtered through 0.45 μm PTFE membrane syringe filters (VWR, Radnor, PA). The filtered samples were analyzed by a Shimadzu HPLC system equipped with a Shimadzu Photodiode Array detector set to a wavelength of 280 nm. The analysis was performed on a Waters C18 column using 95% water and 5% acetonitrile as the mobile phase at a flow rate of 0.3 mL/min.
To quantify p-coumaric acid and naringenin, 1 mL of cell-free culture broth was extracted with 1 mL ethyl acetate. After mixing and centrifugation at 10,000 rpm, the top layer was transferred to a clean tube for evaporation to dryness, and dissolved with 1 mL ethanol. Such prepared samples containing p-coumaric acid and naringenin were analyzed on the Waters C18 column with an isocratic method of 65% water and 35% acetonitrile at a flow rate of 0.3 mL/min. The wavelength used for quantification was 290 nm for naringenin and 300 nm for p-coumaric acid, respectively.
+ Open protocol
+ Expand
7

Plasma MDA Quantification by HPLC

Check if the same lab product or an alternative is used in the 5 most similar protocols
Plasma malondialdehyde (MDA) was determined using high performance liquid chromatography (HPLC) with photodiode array detector (Shimadzu, Japan) as described by Pilz et al. [20 (link)] with some modifications. Briefly, samples (50 μL) were mixed with 200 μL of 1.3 M NaOH and incubated at 60°C for 30 min. After cooling the mixture, 100 μL of 35% HCIO4 was added and centrifuged at 10 000 g for 10 min. Supernatant of the samples (300 μL) was transferred into 1.5 mL of HPLC tubes and 5 mM of DNPH solution (50 μL) was added into the mixture and incubated for 30 min at room temperature. Then, samples (40 μL) were injected into the HPLC.
The amount of MDA was expressed as concentration of MDA in nmol per mL plasma.
+ Open protocol
+ Expand
8

Sesame Seed Metabolite Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
A 50‐mg sample of sesame seeds was frozen in liquid nitrogen and homogenised to a fine powder using a TissueLyser II (Qiagen, Tokyo, Japan). One millilitre of 80% ethanol was added to the homogenised samples and the samples were rotated at room temperature for 1 h. The extracted fraction was filtrated after centrifugation. The filtered fraction was analysed using an ion‐trap time‐of‐flight mass spectrometer (Shimadzu LCMS‐IT‐TOF, Shimadzu Corp., Kyoto, Japan) equipped with a photodiode array detector (Shimadzu, Japan). Each component was separated using a YMC Triart C18 column (TA12S03‐1503WT, 150 mm × 3 mm, 3 µm i.d.) with mobile phases A, 0.1% HCO2H‐H2O; and B, 0.1% HCO2H‐CH3CN in a linear gradient elution (0‐10‐32.5‐33‐40 min and 10‐40‐70‐10‐10% B, respectively) at a flow rate of 0.3 ml min−1.
+ Open protocol
+ Expand
9

Lycopene Extraction and HPLC Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lycopene was extracted from cultures and analyzed as described previously (McNerney and Styczynski, 2017a (link)). Briefly, 500 μL of bacterial culture was pelleted and resuspended in 50 μL of ultrapure water. Lycopene was extracted with 1 mL of acetone at 50°C for 20 min. Cellular debris was pelleted, and the supernatant was removed for analysis. Sudan I (TCI America, Portland, OR, United States) was used as an internal standard (Xu et al., 2006 (link)) and added to the acetone used for extractions at a concentration of 1 μg/mL.
All HPLC analysis was conducted on a Shimadzu Prominence UFLC using an Agilent C18 4.6 mm × 50 mm column with a 5 μm particle size and a Shimadzu photodiode array detector. A solvent ratio of 50:30:20 acetonitrile:methanol:isopropanol was used as the mobile phase (Lv et al., 2016 (link)) and run at a flow rate of 1 mL/min with a 25 μL sample injection volume. Absorption was detected at 471 nm. Retention times and peak intensities were compared to an analytical lycopene standard (Millipore Sigma, St. Louis, MO, United States) spiked into control extractions from DH10B cells, and the internal standard Sudan I was used to account for acetone evaporation during the extraction protocol and for instrument drift.
+ Open protocol
+ Expand
10

Anthocyanin Extraction and Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
Twenty-five milligrams of GPE were mixed with 5 mL of 2% (v/v) methanol, placed in an ultrasonic bath for 10 min, shaken for 30 min, and centrifuged at 8000 rpm for 5 min. The supernatants were collected, and the precipitate was extracted twice by the foregoing procedure. Then, 1 mL supernatant was evaporated to dryness at 40 °C in the RapidVap evaporator, and the residue was redissolved in 1 mL of solution A (32:4:1 (v/v/v) water/acetonitrile/methanoic acid). The extracts were then passed through a 0.45 μm syringe filter. The target anthocyanins were determined using HPLC coupled with a photodiode array detector (Shimadzu Corp., Suzhou, China) and a Synergi Hydro-RP C18 column (250 mm × 4.6 mm, 4 µm; Phenomenex, Torrance, CA, USA). The test parameters used were previously published [29 (link)]. The mobile phase consisted of solutions A and B (16:20:1 (v/v/v) water/acetonitrile/methanoic acid), the detection wavelength was 520 nm, the column temperature was 35 °C, the flow rate was 1 mL/min, and the gradient was 0–10% B at 0–15 min, 10–20% B at 15–30 min, 20–35% B at 30–45 min, 35–100% B at 46–50 min, and 100% B at 50–51 min.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!