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22 protocols using 7 add

1

Apoptosis Analysis of Treated Cells

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Treated cells (1×105) were collected into an EP tube and washed twice with pre-chilled PBS. Subsequently, 100 µl 1X binding buffer (cat. no. 51-66121E; BD Pharmingen; BD Biosciences), 5 µl PE Annexin V (cat. no. 51-65875X′ BD Pharmingen; BD Biosciences) and 5 µl 7-ADD (cat. no. 51-68981E; BD Pharmingen; BD Biosciences) were added according to the protocol, and the cells were incubated in the dark for 15 min at room temperature. Then, 400 µl 1X binding buffer was added to each tube and transferred to a special flow tube with a filter protected from light. Cell apoptosis was detected using a flow cytometer (FACS-Aria II; BD Biosciences) within 1 h and FlowJo 7.6 (FlowJo LLC) was used for analysis.
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2

Visualizing Colostrum Exosome Dynamics in Macrophages

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For analysis the dynamic transport, endocytosis and subcellular co-localization of labeled colostrum exosomes into the macrophages, cells were planted in 6-well plates and Permanox Slides. The PKH26 labeled milk exosomes (from 1 mL colostrum) or PKH26-PBS (1 mL) control was put into THP-1 cells and incubated for 2 h at 37 °C or dynamic tracking the labeled exosomes uptake. The living cell plasma was stained with CellTrackerTM CM-Dil (Molecular Probe, C7000, Revere, MA, USA). The dynamic tracking was visualized by fluorescence microscope (Zeiss Axioplan 2, Carl Zeiss, Dublin, CA, USA). For subcellular co-localization analysis, after 2 h incubation with labeled exosomes, the THP-1 cells were rinsed twice with PBS, and then fixed with 4% formaldehyde (15 min, room temperature), and PBS rinsed twice, mounted with Vectashield (Vector Laboratories Inc., Burlingame, CA, USA), constrained with 3% of 7-ADD (BD Biosciences) for cell nuclei.
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3

Apoptosis Evaluation in Virus-Infected Cells

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Viruses infected cells were incubated with AP21967 for 24 h, and then cell apoptosis was evaluated by flow cytometry. Briefly, cells were collected and washed twice with ice-cold PBS. Cell pellet was stained with Annexin V-PE and 7-ADD (BD PharMingen, San Diego, CA, USA). The flow cytometric analyses were performed by FACS Calibur instrument (BD PharMingen). All experimental results are represented by three independent experiments for each condition.
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Apoptosis Analysis of Tumor Cells

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Tumors cells that were incubation with GNLY from HIS mice serum or isolated from tumor-bearing HIS mice were performed by staining annexin-V-PE and 7-ADD (BD Biosciences) according to the manufacturer’s instructions and then analyzed for apoptosis by flow cytometry. The tumor cells isolated from HIS mice were analyzed the expressions of cleaved caspase3, caspase7 and PARA by western blotting.
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5

Apoptosis Analysis of Metastatic CRC

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Metastatic CRC cells at confluence were detached by trypsinization and incubated with FITC-conjugated Annexin V (5 µL/5 × 105 cells) (Annexin V apoptosis Detection Kit, Invitrogen, Carlsbad, California, USA) and with 7-ADD (5 µL/5 × 105 cells) (BD Pharmingen, San Diego, CA, USA). Metastatic CRC cells maintained in the absence and presence of NaHS (100 µM, 72 h) were incubated for 15 min at resting temperature and then analyzed by Beckman Coulter Navios according to manufactures’ instructions.
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6

Cell Cycle Analysis by Flow Cytometry

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Cells in the logarithmic growth phase were digested into single-cell suspensions and washed twice with PBS. A total of 1 × 106 cells/mL were resuspended in each of two tubes containing medium supplemented with 2% FBS. Verapamil (20 μL) was added to one tube (to inhibit dye efflux) and incubated for 30 min at 37 °C protected from light. Vybrant DyeCycle Violet stain (Sigma-Aldrich) at a final concentration of 5 µg/mL was then added to both tubes followed by incubation with shaking for 90 min at 37 °C in the dark, and with mixing every 10 min. The samples were subsequently centrifuged at 1500 × g, the supernatant was discarded, and the cells were resuspended in 1 mL of PBS. Finally, 5 μL of 7-ADD (BD PharMingen) was added to each tube followed by flow cytometric detection. Each set of experiments was repeated three times.
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7

Breast Cell Subpopulation Isolation

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Cell suspension isolated from digested breast tissue was pre-blocked and subsequently labeled with an allophycocyanin-conjugated rat antibody to human CD49f (clone GOH3, R&D Systems) and FITC-conjugated mouse antibody to human EpCAM (clone VU1-D9, StemCell Technologies), following a previously published protocol.6 (link) Biotin-conjugated mouse antibodies to human CD45 (clone H130, eBiosciences), CD235a (clone HIR2, eBiosciences), and CD31 (clone WM59, eBiosciences) were used to label hematopoietic and endothelial cells, followed by pacific blue-conjugated streptavidin (Invitrogen). Cells were incubated with 7-ADD (BD Bioscience) before analysis to distinguish between live and dead cells. For cell sorting on a fluorescence-activated cell sorter (FACS) Aria (Becton Dickinson) and Moflo Astrios cell sorters (Beckmen Coulter), cells were separated into the following four fractions: EpCAMCD49f stromal cells, EpCAMlowCD49fhigh basal epithelial cells, EpCAMhigh CD49f+ luminal progenitor cells, and EpCAMhighCD49f mature luminal epithelial cells.
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8

Annexin V-PE and 7-AAD Apoptosis Assay

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The bEnd.3 cells were harvested, washed twice with PBS, and then resuspended in 1× binding buffer at a concentration of 1 × 106 cells/mL. Subsequently, they were incubated with Annexin V-PE and 7-ADD (BD bioscience) for 15 minutes at room temperature in the dark. After addition of 400 μL binding buffer and incubation for 1 hour, the stained bEnd.3 cells were analyzed within 1 hour by Accuri C6 flow cytometry (BD science).
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9

Isolation and Purification of Lung Stem/Progenitor Cells

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LSPCs were isolated as described previously (McQualter and Bertoncello, 2015 (link); Rabata et al., 2017 (link)). Briefly, the lungs were chopped up using scalpels, and the resulting mince was digested by Liberase (0.048 mg/ml; Roche) and incubated for 45 min at 37°C with shaking. The suspension was passed through 18G and 21G needles and treated with DNase I (20 U/ml). Next, the suspension was passed through a 100 μm cell strainer, treated with a red blood cell lysis buffer, and passed through a 40 μm cell strainer. The resulting single-celled suspension was centrifuged to collect the cells. The pellet was suspended in a blocking buffer [1% BSA in HBSS (both Merck)] and incubated for 20 min at room temperature. After centrifugation, the cells were resuspended at 1 × 107 cells/ml in a FACS buffer containing the selection antibody cocktail (anti-CD104, anti-EpCAM, anti-CD24, anti-CD49f, anti-CD45; see Supplementary Table 1) and incubated in ice in the dark for 20 min. The cells were washed with HBSS, passed through a 30 μm cell strainer, and incubated with 10 μl/ml 7-ADD (BD Biosciences) for 5 min in ice in the dark. Cells were then sorted using FACSAria II SORP (BD Biosciences).
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10

Apoptosis Assay with GZD824 Treatment

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Cells were treated with indicated concentrations of GZD824 or DMSO for 48 h at 37℃. After incubation, cells were collected and washed twice with pre‐cold PBS. About 6 × 105 cells were resuspended in 100 μl of 1× BD binding buffer solution (#556454, BD), and then stained with 7‐ADD (#559925, BD) and Annexin V‐PE (#556422, BD) in the dark for 15 min. Finally, 400 μl of 1×BD binding buffer solution were added to stop dyeing. The cells were then measured on a Guava easyCyte flow cytometer (Merck, USA).
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