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9 protocols using improvision ultraview vox system

1

Imaging Protocols for Live-Cell Microscopy

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For imaging experiments, cells were plated on 35mm glass bottom dishes at low density (MatTek Corp, Ashland, MA). Immunofluorescence and live cell imaging were carried out one day after transfection. Spinning disc confocal (SDC) microscopy was performed using the Improvision UltraVIEW VoX system (Perkin-Elmer) built around a Nikon Ti-E inverted microscope, equipped with PlanApo objectives (40x1.0-NA 1.0 and 60X1.49-NA) and controlled by Volocity (Improvision) software. Excitation light was provided by 488-nm/50-mW diode laser (Coherent) and 561-nm/50-mW diode laser (Cobolt), and fluorescence was detected by EM-CCD camera (C9100–50; Hamamatsu Photonics).
Total internal reflection fluorescence (TIRF) microscopy was performed on a setup built around a Nikon TiE microscope equipped with 60X1.49-NA. Excitation light was provided by 488-nm (for GFP), 561-nm (for mCherry/mRFP/mdsRed) and 640-nm (for iRFP) DPSS lasers coupled to the TIRF illuminator through an optic fiber. The output from the lasers was controlled by an acousto-optic tunable filter and fluorescence was detected with an EM-CCD camera (Andor iXon DU-897). Acquisition was controlled by Andor iQ software. Images were sampled at 0.20 Hz with exposure times in the 100–500 ms range. SDC microscopy was carried out at room temperature (20–25°C) and TIRF microscopy at 37°C.
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Spinning Disk Confocal Microscopy Imaging

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Spinning disk confocal microscopy was performed using an Improvision UltraVIEW VoX system (Perkin-Elmer) built around a Olympus XI71 inverted microscope, equipped with PlanApo objectives (×60, 1.45 NA) and controlled by the Volocity software (Improvision). To image DiI and SiR, 561-nm and 640-nm laser lines with appropriate filters (615 ± 35 and 705 ± 45 nm, respectively) were used.
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3

Visualizing LRRK2 Interactions with Lipid Membranes

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For Fig. 1, Rhod-PE labeled PS liposomes (20 μM) were incubated with different concentrations of LRRK2 as indicated. For Fig. 4, Cy5-PE labeled GC/PS nanotubes (20 μM) were incubated with GFP-LRRK2 (100 nM) in 35-mm glass bottom dishes (MatTek Corp) at 37 °C for 30 min. Images were captured with a Spinning disk confocal (SDC) microscopy at room temperature on a Nikon Ti-E inverted microscope using the Improvision UltraVIEW VoX system (Perkin-Elmer). Excitation wavelengths used were 561 nm (rhodamine), 640 nm (Cy5), and 488 nm (GFP). All images were analyzed with ImageJ (RRID:SCR_003070). The detailed protocol was deposited in protocols.io (DOI: 10.17504/protocols.io.yxmvmndqng3p/v1).
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4

Imaging Protocols for Live-Cell Microscopy

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For imaging experiments, cells were plated on 35mm glass bottom dishes at low density (MatTek Corp, Ashland, MA). Immunofluorescence and live cell imaging were carried out one day after transfection. Spinning disc confocal (SDC) microscopy was performed using the Improvision UltraVIEW VoX system (Perkin-Elmer) built around a Nikon Ti-E inverted microscope, equipped with PlanApo objectives (40x1.0-NA 1.0 and 60X1.49-NA) and controlled by Volocity (Improvision) software. Excitation light was provided by 488-nm/50-mW diode laser (Coherent) and 561-nm/50-mW diode laser (Cobolt), and fluorescence was detected by EM-CCD camera (C9100–50; Hamamatsu Photonics).
Total internal reflection fluorescence (TIRF) microscopy was performed on a setup built around a Nikon TiE microscope equipped with 60X1.49-NA. Excitation light was provided by 488-nm (for GFP), 561-nm (for mCherry/mRFP/mdsRed) and 640-nm (for iRFP) DPSS lasers coupled to the TIRF illuminator through an optic fiber. The output from the lasers was controlled by an acousto-optic tunable filter and fluorescence was detected with an EM-CCD camera (Andor iXon DU-897). Acquisition was controlled by Andor iQ software. Images were sampled at 0.20 Hz with exposure times in the 100–500 ms range. SDC microscopy was carried out at room temperature (20–25°C) and TIRF microscopy at 37°C.
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5

Live-cell imaging of cellular condensates

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Cells were imaged with a spinning disk confocal microscope using a planar Apo objective 60x, 1.49-NA and an EM‐CCD camera (C9100‐50; Hamamatsu Photonics) under the control of Improvision UltraVIEW VoX system (PerkinElmer). Live-cell imaging buffer (Invitrogen) was used for live-cell imaging of COS7 cells. For 1,6-Hexanediol experiments, cells were briefly washed in Live-cell imaging buffer, incubated with 3% 1,6-Hexanediol in Live-cell imaging buffer and then returned to Live-cell imaging buffer alone. For live imaging of neurons, neuronal cultures were switched form neurobasal medium to Tyrode buffer (136 mM NaCl, 2.5 mM KCl, 2 mM CaCl2, 1.3 mM MgCl2, 10 mM HEPES and 10 mM glucose). 3% 1,6-Hexanediol was added to this medium as indicated and stimulation was performed by replacing 136 mM NaCl, 2.5 mM KCl with 78.5 mM NaCl, 60 mM KCl. Unless specified otherwise, time-lapse images were acquired every 5 s. For FRAP experiment of vesicle condensates, a single droplet was bleached by scanning with a 488 nm laser for 1 sec and fluorescence recovery was subsequently imaged at 5 s intervals.
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6

Live Imaging of Cells by Spinning Disk Confocal

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Spinning disk confocal (SDC) live microscopy was carried out at 35 °C either on a Nikon Ti-E inverted microscope using the Improvision UltraVIEW VoX system (PerkinElmer) and a planar Apo objective ×60, 1.49-NA. Fluorescence was detected by an EM‐CCD camera (C9100‐50; Hamamatsu Photonics). During imaging, cells were incubated in tyrode solution (136 mM NaCl, 2.5 mM KCl, 2 mM CaCl2, 1.3 mM MgCl2, 10 mM HEPES and 10 mM glucose). All images were analyzed with ImageJ.
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7

Spinning Disc Confocal Microscopy

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Spinning disc confocal microscopy was performed using the Improvision UltraVIEW VoX system (Perkin-Elmer) built around a Nikon Ti-E inverted microscope and a Hamamatsu C9100-50 camera, equipped with PlanApo objectives (60×/1.49 NA) and controlled by Volocity (Improvision) software.
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8

Multicolor Confocal Imaging Acquisition

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Multicolor images were acquired sequentially through a 60× oil objective (1.4 NA, CFI Plan Apochromat VC) at 1-min intervals, and at least 10 frames were acquired before the addition of compound. All imaging experiments were performed on a spinning-disc confocal (SDC) microscope, using the Improvision UltraVIEW VoX system (PerkinElmer, Waltham, MA) built around a Nikon Ti-E Eclipse microscope equipped with Perfect Focus, 14-bit electron-multiplying charge-coupled device camera (C9100-50; Hamamatsu Photonics, Hamamatsu, SZK, Japan), and spinning disc-confocal scan head (CSU-X1; Yokogawa Corporation of America, Sugar Land, TX) controlled by Volocity software (PerkinElmer, Waltham, MA). Green fluorescence was excited with a 488-nm/50-mW diode laser (Coherent) and collected by a band pass (BP) 527/55-nm filter. Red fluorescence was excited with a 561-nm/50-mW diode laser (Cobolt) and collected by a BP 615/70-nm filter.
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9

Optogenetic Mitochondrial Recruitment

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For whole-cell activation experiments, an Andor Dragonfly system (see above) was used, and recruitment to mitochondria was achieved with a single 200-ms pulse of the 488-nm laser. For localized activation to promote recruitment to a single mitochondrion, an Improvision UltraVIEW VoX system (PerkinElmer), built around a Nikon Ti-E inverted microscope and controlled by Volocity software (Quorum Technologies), was used. Imaging was performed at 37°C with a 63× plan apochromat oil objective (1.45 NA). A built-in photoperturbation unit was used to deliver 488-nm light pulses in a 5-µm2 area. The protocol for the optogenetic experiments was deposited in protocols.io: https://dx.doi.org/10.17504/protocols.io.bvgvn3w6.
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