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9 protocols using anti arginase 1

1

Islet Inflammatory and Dedifferentiation Analysis

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Islets were harvested, fixed in 4% paraformaldehyde, and immersed in 30% sucrose solution to be embedded in a frozen block. Inflammatory markers and dedifferentiation markers were detected in cell sections by immunofluorescence. Anti-FoxO1 (Santa Cruz, Dallas, Texas, USA), anti-cleaved caspase 3 (Cell Signaling, Danvers, MA, USA), anti-Oct4 (Abcam, Cambridge, UK), anti-NGN3 (Abcam), anti-A11 oligomer (Invitrogen), anti-Pdx1 (Abcam), anti-IL-1β (Abcam), and anti-insulin (Abcam) were used as primary antibodies. M1/M2 macrophage markers were identified using the antibodies of M2 macrophage differentiation markers (anti-arginase-1; Cell Signaling) and M1 macrophage differentiation markers (CD80; Abcam). Sections were incubated with primary antibody diluted in blocking buffer overnight at 4°C. Secondary antibodies (Alexa Fluor® 488-conjugated goat anti-rabbit, Alexa Fluor® 488-conjugated goat anti-mouse, and Alexa Fluor® 594-conjugated goat anti-rabbit; Abcam) were added and incubated for 1 h at room temperature. Counterstaining was performed using DAPI (1 : 10,000). Images were obtained from each section using a fluorescent microscope (Olympus, Shinjuku, Tokyo, Japan).
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2

Macrophage Protein Expression Analysis

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Peritoneal cells were isolated immediately after the infected and control mice were sacrificed under sterile conditions 9 months post-infection. Macrophages were separated using a Macrophage Isolation Kit (Peritoneum) (Miltenyi Biotec, Bergisch Gladbach, Germany) and the purity (F4/80+) exceeded 90%, as determined by flow cytometry. Macrophages and non-macrophage cells were respectively lysed for 30 min on ice in a RIPA solution containing protease inhibitors. Lysates were then separated by 10% SDS-PAGE and transferred to a polyvinylidene difluoride membrane (Merck Millipore, Darmstadt, Germany). After blocking of non-specific binding sites, the respective blots were incubated with different primary antibodies [anti-Arginase-1, anti-Arginase-2, anti-iNOS and anti-β-actin (Cell Signaling Technology, Danvers, MA, USA)] and the respective HRP-conjugated secondary antibodies. The results were visualized using the ECL detection system (Merck Millipore) and recorded with a Universal Hood II Imager (Bio-Rad, California, USA). Band intensities were evaluated using image J (NIH, Bethesda, MD, USA).
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3

Protein Expression Analysis of Brain Tissue

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The brains were homogenized on ice with a Ultrasonic crusher (HD3000, Wiggens, Beijing, China) in ice-cold lysis buffer (1 × PBS, 1% Nonidet P-40, 0.5% sodium deoxycholate, and 0.1% SDS, RIPA) supplemented with protease inhibitors PMSF. Lysates were centrifuged at 10,000 × g for 20 min at 4 °C for two times, and the supernatants were collected. Protein concentrations were determined by a Bradford protein assay. Equal amounts of protein (30 μg) were separated by SDS-PAGE, and transferred onto a polyvinylidene fluoride filter (PVDF) membrane (Millipore). Membranes were blocked with 5% non-fat milk, and incubated at 4 °C overnight with anti-NG2, anti-GalC, anti-GDNF, anti-NT-3, anti-BDNF, anti-iNOS, anti-Arginase-1 and anti-β-actin (Cell signaling, Davers, MA, USA). Bands were visualized by HRP-conjugated secondary antibodies (Thermo Scientific, MA, USA) and chemiluminescence (ECL) kit under ECL system (Millipore).
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4

Signaling Pathway Antibodies and Assays

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Anti–phosphorylation (p) inhibitor of B (IκB)-α, anti-PKG, anti-VASP, and anti–p-VASP (Ser 239), anti-Arginase1, anti-STAT6, anti–p-STAT6 (Tyr 641), and β-actin antibodies were from Cell Signaling Technology (Beverly, MA). Anti-eNOS mouse polyclonal antibody was obtained from BD Biosciences (Lexington, KY). Anti-GAPDH rabbit polyclonal antibody was obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Biosource total Akt and p-Akt (Ser 473) ELISA kits were purchased from Invitrogen (Carlsbad, CA), and IRS2 and p-IRS2 ELISA kits were purchased from Cell Signaling Technology. Lactate was measured using an Amplex Red Glucose/Glucose Oxidase Assay Kit (Invitrogen). (Z)-1-[N-(2-aminoethyl)-N-(2-ammonioethyl)amino] diazen-1-IM1,2-diolate (DETA-NO) was purchased from Enzo Life Sciences. DETA-NO was used within 24 h after the reconstitution.
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5

Comprehensive Antibody Panel for Research

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anti-FLAG M2 (Sigma, F1804), anti-HA.11 (BioLegend, 901501), anti-Myc (clone 9E10, Santa Cruz Biotechnology, sc-40), anti-GST (Yeasen, 30902ES60), anti-NRP1 (Cell Signaling Technology, #3725), anti-NRP2 (Cell Signaling Technology, #3366), anti-EGLN3 (Novus, NB100–303), anti-Erk3 (Santa Cruz Biotechnology, sc-365234), anti-arginase1 (Cell Signaling Technology, #9819), anti-α-tubulin (Sigma, T6074), anti-β-actin (Yeasen, 30101ES60), anti-GAPDH (Immunoway, YM3029), anti-CD31 (Abcam, ab28364), anti-Mac3 (BD Phmarmingen, 550292), anti-CD8 (InVitrogen, #14–0081–82), anti-F4/80 (Abcam, ab6640), anti-CD25 (Servicebrio, GB11612), anti-VEGF (Novus Biologicals, NB100–664), anti-PCNA (Servicebrio, GB11010), anti-cleaved caspase-3 (Cell Signaling Technology, #9661), anti-ubiquitin (Santa Cruz Biotechnology, sc-8017), anti-MMP2 (Abcam, ab37150), anti-phospho-IкBα (Cell Signaling Technology, #2859), anti-iNOS (Cell Signaling Technology, #2982), anti-p53 (Santa Cruz Biotechnology, sc-126), anti-LAMP2 (Santa Cruz Biotechnology, sc-18822), anti-p16 (Santa Cruz Biotechnology, sc-1661), anti-p21 (Santa Cruz Biotechnology, sc-817), normal mouse IgG1 (Santa Cruz Biotechnology, sc-3877), and anti-mouse IgG(H + L) (Jackson ImmunoResearch, 715-585-151).
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6

MPTP-Induced Parkinson's Disease Model

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1-Methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) and 3,4-Dihydroxyphenylacetic acid (DOPAC) were provided by Sigma-Aldrich (Saint Louis, USA). Dopamine (DA) and Homovanillic acid (HVA) were provided by Solarbio (Beijing, China). Anti-Tyrosine Hydroxylase antibody was provided by Abcam (Cambridge, UK), anti-MHC class II was provided by Santa Cruz (Dallas, USA), anti-Arginase-1 was purchased from Cell Signaling Technology (Danvers, MA, USA), goat anti-rabbit IgG and goat anti-mouse IgG conjugated to HRP were purchased from Beyotime Institute of Biotechnology (Shanghai, China), and ELISA Kits were provided by R&D (Minneapolis, USA).
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7

Western Blot Analysis of Macrophage Proteins

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Macrophages were lysed in RIPA buffer containing protease inhibitor on the ice for 10 minutes and then centrifuged at 14,000g for 5 minutes to generate protein lysates. The protein concentration was determined by BCA assays and then mixed with 4× Laemmli sample buffer and heated at 95°C for 5 minutes. Protein was separated by 4%–20% gradient SDS-PAGE and transferred onto nitrocellulose membranes. Then, the membranes were blocked with 5% nonfat milk in TBST and immunostained with primary antibodies, anti-GPX4 (Novus, MAB5457, 1:1000) anti-ferritin (Abcam, ab65080, 1:3000), anti-malondialdehyde (Abcam, ab6463, 1:2000), anti-arginase 1 (Cell Signaling Technology, 93668s, 1:1000), and β-actin (Cell Signaling Technology, 4970s, 1:5000) at 4°C overnight and detected using HRP-conjugated secondary antibodies.
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8

Immunofluorescence Analysis of Macrophage Markers

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Tissue sections were de‐paraffined, and then heated in citric acid buffer (pH 6.0) at 121°C for 15 min for antigen retrieval. The sections were blocked with 10% bovine serum before incubation with primary antibodies overnight at 4°C: anti‐CD68 (rat monoclonal, dilution 1/100, MCA1957; Bio‐Rad), anti‐IL1RL2 (rabbit polyclonal, dilution 1:200, # PA5‐38013; Invitrogen), anti‐TNF‐α (rabbit monoclonal, dilution 1:400, #11948; Cell Signaling Technology), anti‐iNOS (rabbit monoclonal, dilution 1:400, #13120; Cell Signaling Technology), anti‐Arginase‐1 (rabbit monoclonal, dilution 1:400, #93668; Cell Signaling Technology), and anti‐CD206 (rabbit polyclonal, dilution 0.1 μg/ml, ab64693; Abcam). After incubation, the sections were incubated with Alexa Fluor 488‐conjugated (A11006, 5 μg/ml; Invitrogen) or Alexa Fluor 594‐conjugated (A11012, 5 μg/ml, Invitrogen) secondary antibodies for 1 h, and then mounted with 4′,6‐diamidino‐2‐phenylindole (DAPI) for 10 min at room temperature. Cells were observed using a fluorescence microscope (Biorevo BZ‐90000; Keyence).
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9

Comprehensive Immunoblotting Methodology

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Immunoblotting was conducted as described previously [15 (link), 16 (link)]. Primary antibodies applied in this study include the following: anti-NLRP3 (AdipoGen, AG-20B-0014-C100), anti-ASC (AdipoGen, AG-25B-0006), anti-caspase 1 (AdipoGen, AG-20B-0042-C100), anti-interleukin-1β (R&D Systems, AF-401-NA), anti-FLAG (Sigma, F1804), anti-HA (Biolegend, 901501), anti-myc (Santa Cruz Biotechnology, sc-40), anti-gasdermin D (Abcam, ab209845), anti-ABCA1 (Abcam, ab18180), anti-CD36 (Novus Biologicals, NB400-144), anti-Parkin (Cell Signaling Technology, #4211), anti-phosphorylated Parkin Serine 65 (Affinity, AF3500), anti-VDAC1 (Cell Signaling Technology, #4661), anti-LC3 (Sigma, L8918), anti-p62 (MBL, PM045), anti-caspase 8 (Novus Biologicals, NB100-56116), anti-cleaved caspase 3 (Cell Signaling Technology, #9661), anti-arginase 1 (Cell Signaling Technology, #9819), anti-PARP (Cell Signaling Technology, #9542), anti-α-tubulin (Antgene, Wuhan, China; ANT328), anti-β-actin (Yeasen, Shanghai, China; 30101ES50), and anti-GAPDH (Antgene, Wuhan, China; ANT324).
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