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43 protocols using goat anti mouse igg

1

Western Blot Analysis of Phosphorylated Proteins

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Cells treated with inhibitors at the indicated concentrations were lysed in PhosphoSafe™ Extraction Reagent (EMD Biosciences, Inc, Madison, WI) and protein concentrations were determined using the BCA method (Thermo Scientific, Rock-ford, IL) as described previously [22 (link)]. Briefly, protein samples were boiled in an equal volume of sample loading buffer for 5 min. Equal amounts of proteins were electrophoresed on a 4–20% Tris–HCl polyacrylamide gel and transferred to a nitrocellulose membrane. After blocking with 5% skim milk in TBST buffer, membranes were hybridized with the indicated antibodies. The blots were incubated with either anti-β-actin from Sigma (St. Louis, MO, USA) or primary antibodies against phospho-p44/42 MAPK (ERK1/2) and total-p44/42 MAPK (ERK1/2) from Cell Signaling (Beverly, MA, USA). Blots were then incubated with the secondary antibody, goat anti-mouse IgG (LI-COR Biotechnology, Lincoln, Nebraska, USA). The antigen–antibody complexes were visualized using the Odyssey Infrared Imaging System (LI-COR Biotechnology, Lincoln, NE, USA). Protein expression was determined by a gel documentation system (Bio-Rad, Model 700) equipped with Quantity One software.
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2

Western Blot Analysis of Cellular Proteins

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After desired treatments as specified as indicated, cells were washed twice with PBS and lysed in buffer (20 mM Tris–HCl, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 2.5 mM sodium pyrophosphate, 1 mM β-glycer-ophosphate, 1 mM sodium vanadate, 1 mg ml−1 leupeptin, 1 mM phenylmethyl-sulfonylfluoride). Equal amounts of protein (30 μg) were loaded onto 10% SDS–PAGE gels. Western detection was carried out using a Li-Cor Odyssey image reader (Li-Cor, USA) (Supplementary Fig. 17). The goat anti-rabbit IgG (Cat#C30502-01) and goat anti-mouse IgG (Cat#C30509-01) secondary antibodies were obtained from Li-Cor (USA). The final concentration of the secondary antibodies used was 0.1 μg ml−1 (1:10000 dilution). The primary antibodies against β-Actin (Cat#60008-1, 1:5000 dilution), GOT1 (Cat#14886-1-AP, 1:1000 dilution), DHODH (Cat#14877-1-AP, 1:1000 dilution), HIF1α (Cat#20960-1-AP, 1:1000), and UMPS (Cat#14830-1-AP, 1:1000) were purchased from Proteintech (USA). Antibodies against CAD (Cat#sc-376072 from Santa Cruz, USA) and pCAD (Ser1859) (Cat#70307 from Cell Signaling Technology) were used with a dilution of 1:1000.
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3

Immunoblotting Analysis of SF3B1 in Transfected Cells

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For immunoblotting of SF3B1/FLAG-SF3B1proteins in transiently-transfected HEK293T and stably-transduced TF1 and K562 cells in
which transcriptome analysis was done in parallel, Western blotting using a mouse
anti-human-SF3B1 antibody (Abcam #172634) at 1:1000 dilution was used.
Immunoblotting following affi nity purification of SF3B1 in HEK293T and TF1 cells was
performed as previously described, and primary antibodies were: anti-SF3B1 (Bethyl
Laboratories, A300–996A, 1:1,000), anti-ACTIN (Sigma, A2066, 1:2,000),
anti-DYKDDDDK (GenScript, A00187, 1:1,000), anti-SUGP1 (Bethyl
Laboratories A304–675A-M, 1:1,000), and anti-PHF5A (Proteintech 15554–1-AP,
1:1000)17 (link). Secondary antibodies
were: Donkey anti-Rabbit IgG (LI-COR, 926–68073, 1:5,000) and Goat anti-Mouse IgG
(LI-COR, 926–32210, 1:5,000).
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4

Complement C3 Activation in CSF and Plasma

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For comparison of complement C3 activation in CSF and plasma samples, 20 μl of CSF and 2 μl of plasma samples were loaded on an SDS-PAGE gel. Samples were transferred to polyvinylidene difluoride (PVDF) membranes. The membranes were blocked and then incubated with mouse anti-human C3/C3b/iC3b/C3dg monoclonal antibody (1:1,000, Cedarlane, Ontario, Canada) in TBST (Tris-buffered saline supplemented with Tween 20) containing 5% dry milk at 4 °C overnight. Blots were then washed and incubated with goat anti-mouse IgG (1:15,000, LI-COR Bioscience, Nebraska, USA) diluted in TBST containing 2% dry milk. The membranes were developed with an Odyssey system (Li-COR Bioscience) according to the manufacturer’s protocol.
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5

Hsp90-targeted Photodynamic Therapy

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Verteporfin (VP, Visudyne, Novartis Pharmaceuticals Corp., Basel, Switzerland), a well-characterized PS also serving as an nIR dye with a 700 nm emission peak, and HS201, a novel PS made of VP tethered to an Hsp90 small-molecule inhibitor (HS10), were used for in vitro and in vivo imaging and PDT. The HS201 compound was developed and supplied by the Haystead Lab (Duke University Department of Pharmacology and Cancer Biology) as previously reported [12 (link),13 (link)]. Anti-Hsp90 antibody (clone AC88, Cat# ab13492,) was purchased from Abcam plc. (Cambridge, UK). Secondary antibodies (goat anti-mouse IgG, goat anti-rabbit IgG and donkey anti-mouse IgG antibodies) conjugated with nIR dye, IRDye 800CW (Cat# 926-32210, 926-32211 and 926-32212, respectively), were purchased from LI-COR Inc. (Lincoln, NE, USA). Anti-murine PD-L1 antibody (clone; 10F.9G2, Cat# BE0101) was purchased from Bio X cell (Lebanon, NH, USA) and used for animal treatment.
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6

Western Blot Analysis of Cardiomyocyte Proteins

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Ice‐cold radioimmunoprecipitation assay buffer (containing 50 mmol/L Tris‐Hcl, 150 mmol/L NaCl, 1% Triton X‐100, 1% sodium deoxycholate and 0.1% SDS) was used to extract protein from cardiomyocytes and heart tissue. Then protein was subjected to 10% SDS‐PAGE (50 μg per sample). After transferred onto immobilon membranes (Millipore, Billerica, MA, USA), proteins were incubated with primary antibodies overnight at 4°C. The primary antibodies included the following: ZBTB20 (#ab243143, Abcam, 1:1000 diluted), Bax (#2772), Bcl‐2 (#2870), c‐caspase3 (#9664), T‐caspase3 (#9661), TNFα (#11948), Phospho (P)‐ASK1 (Thr845), total (T)‐ASK1(Thr845)(# #3765), P‐JNK1/2 (#4668p), T‐JNK1/2(#9258), P‐ERK1/2 (#4370P), T‐ERK1/2 (#4695), P‐P38 (#4511P), T‐P38 (#9212P) and GAPDH (#2118, Cell Signaling Technology, 1:1000 diluted), And then incubated with second antibodies of either goat anti‐rabbit IgG (926‐32211; LI‐COR) or goat antimouse IgG (C11026‐03; LI‐COR) for one hour. Analysis and quantification was performed by an Odyssey infrared imaging system (LI‐COR Biosciences). The GAPDH was used as reference.
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7

Western Blot Protein Detection

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Proteins were separated by 10% (wt/vol) SDS-PAGE and transferred to a nitrocellulose membrane. Membranes were probed with primary antibodies (all at 1:1,000 dilution) overnight at 4 °C, and subsequently incubated with IRDye 800CW-conjugated goat anti-rabbit IgG or goat anti-mouse IgG (both at 1:10,000 dilution; LI-COR Biosciences, Lincoln, NE, USA) for 1 h. Protein bands were visualized with Odyssey infrared imaging system (LI-COR Biosciences).
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8

SDS-PAGE and Western Blot Analysis of Hepatic Proteins

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Denatured proteins were separated by 12% (wt/vol) SDS-PAGE and transferred to a nitrocellulose membrane. The membranes were incubated overnight at 4 °C with the following primary antibodies (all at 1:1,000 dilution): rabbit anti-FGF21 (Cat: ab171941, Abcam, Cambridge, UK), rabbit anti-glucose 6 phosphatase (G6Pase; Cat: ab83690, Abcam), rabbit anti-phosphoenolpyruvate carboxykinase (PEPCK; Cat: 16754-1-AP, Proteintech Group, Rosemont, IL) and mouse anti-GAPDH (Cat: TA-08, Zhongshan Biotechnology, Beijing, China). After three washes, the blots were incubated with IRDye 800CW-conjugated goat anti-rabbit IgG or goat anti-mouse IgG (both at 1:10,000 dilutions; LI-COR Biosciences, Lincoln, NE) for 1 h. Protein bands were visualized with an Odyssey 290 infrared imaging system (LI-COR Biosciences). GAPDH was used as a loading control.
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9

Western Blot Analysis of Mitochondrial Proteins

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Cells were lysed using a buffer with sodium dodecyl sulfate (SDS) (Cell Signaling Technology, Danvers, MA, USA, #9803; following the supplier’s protocol), followed by centrifugation at 12,000× g for 10 min, and the supernatants were recovered as whole-cell extracts. Protein content was measured using the Bradford reagent. Protein extract samples were loaded on 12% polyacrylamide gels (Invitrogen #NP0343BOX, supplied by Fisher Scientific Co., Boston, MA, USA) and electrophoresed for 2 h at 14.5 V/cm. Wet electroblotting transfer was performed for 3 h on ice onto a polyvinylidene difluoride (PVDF) membrane. The primary antibodies included anti-Ape1 (Novus Inc. Guaynabo, PR, USA, #NB100-101; used at 1:1000), anti-DNA2 (Abcam Inc., Waltham, MA, USA, #ab96488; used at 1:500), anti-ExoG (Abcam #ab77736; used at 1:500), anti-Fen1 (Novus NB100-320; used at 1:700), anti-NDUFA9 (specific for a Complex I protein; Abcam ab14713; used at 1:1000), and anti-TFAM (Cell Signaling 7495; used at 1:1000). The secondary antibodies (both used at 1:10,000) were goat anti-rabbit IgG (Licor Inc., Omaha, NB, USA, #925-68021) and goat anti-mouse IgG (Licor 926-32210). The developed blots were placed in distilled water, scanned on a Li-COR Odyssey (Licor Inc. Omaha, NB, USA), and quantified using Image Studio software (version 5.5.4), with n ≥ 3.
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10

Western Blot Analysis of Protein Targets

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Western blotting was performed as described (14 ). Briefly, protein samples were resolved by SDS-PAGE and transferred to nitrocellulose membranes, followed by immunoblotting with primary and secondary antibodies. Primary antibodies were anti-DHX15 (Bethyl Laboratories, A300-389A, 1:1,000), anti-Glutathione S-transferase (GST) (Invitrogen, A5800, 1:1,500), anti-DYKDDDDK (GenScript, A00187, 1:1,000), anti-SUGP1 (Bethyl Laboratories, A304-675A-M, 1:1,000), anti-SUGP1 (Sigma-Aldrich, HPA004890, 1:1,000), anti-SF3B1 (Bethyl Laboratories, A300-996A, 1:1,000), anti-ACTIN (Sigma-Aldrich, A2066, 1:2,000), anti-HA rabbit polyclonal (Abm, G166, 1:1,000), and anti-HA mouse monoclonal (Sigma-Aldrich, H3663, 1:1,000). Secondary antibodies were Donkey anti-Rabbit IgG (LI-COR, 926-68073, 1:5,000) and Goat anti-Mouse IgG (LI-COR, 926-32210, 1:5,000). Immunofluorescence signals on the membranes were then detected using the ChemiDoc Imaging System (Bio-Rad).
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