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17 protocols using tgf βri

1

TGF-β1 Signaling Pathway Analysis

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Recombinant transforming growth factor beta 1 (TGF-β1) was purchased from Peprotech (Cat# 100-21, Korea). Anti-HA (hemagglutinina) agarose gel was from Sigma-aldrich (Cat# E6779, St. Louis, MO). Antibodies against phospho-Stat3 (Tyr705), total-Stat3, total-Smad2/Smad3, phospho-Smad2 (Ser465/467)/Smad3 (Ser423/425), TGF-β, N-cadherin, vimentin, HA tag, Smad4, nitrotyrosine, Total-EGFR, phospho-EGFR (Y845, Y1068, Y1173), total-Src, and phospho-Src (Y416) were all from Cell Signaling Technology (Danvers, MA). TGFβRI, TGFβRI, AQP1 and Smad7 was from Santa Cruz (Dallas, Texas). E-cadherin and fibronectin were from BD Biosciences (Franklin Lakes, NJ). AQP2 was from Novus Biologicals (Littleton, CO, USA). THP was from AbD serotec (Kidlington, United Kingdom). Antibodies against α-SMA, calbindin D28K and β-actin were from Sigma-Aldrich (St. Louis, MO). Specific antibody against PrdxV was gifts from Dr. Ho Zoon Chae (Chonnam National University, Korea).
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2

Molecular Mechanisms Underlying Cellular Pathways

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3-Methyladenine (3-MA) was purchased from Selleckchem (Houston, TX). Antibodies to p-Smad3, Smad3, p-extracellular signal–regulated kinases 1/2 (ERK1/2), ERK1/2, p-EGFR, Beclin-1, Notch1, p-TAK1, TAK1 were purchased from Cell Signaling Technology (Danvers, MA). Antibodies to Collagen I (A2), GAPDH, EGFR, TGFβRI, p-NF-κB (p65), NF-κB (p65), TNF-α, Jagged-1, CD68 and CD3 were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Anti-p-Histone H3 antibody was purchased from Abcam (Cambridge, MA). MCP-1, RANTES, TGF-β1 ELISA kits and antibody to lipocalin-2 (Lcn2) were purchased from R&D systems (Minneapolis, MN). Anti-LC3 antibody was purchased from Novus Biologicals (Littleton, CO). Anti-β-Catenin antibody was purchased from BD Biosciences (San Diego, CA). Anti-Wnt1 antibody was purchased from Rockland (Limerick, PA, U.S.A.). Vectastain ABC kit was from Vector Laboratories (Burlingame, CA). Malondialdehyde (MDA) and superoxide dismutase (SOD) biochemical reagent kits were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Antibodies to α-smooth muscle actin (α-SMA ) and β-actin, secondary antibodies for Western blot, and all other chemicals were purchased from Sigma (St. Louis, MO).
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3

Probing Epithelial-Mesenchymal Transition Markers

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Total protein were extracted and subjected to Western blotting as previous described [23 ]. Monoclonal rabbit primary antibodies against E-cadherin, β-catenin, vimentin, Src and p-Src (Tyr416) (Cell Signal Technology, Boston, MA, USA), polyclonal rabbit primary antibody against Flot2 (Abcam, San Francisco, CA, USA), TGF-β RI (Santa Cruz, Dallas, TX, USA) and the secondary fluorescence goat anti-rabbit antibody (LI-COR, Lincoln, NE, USA) were used in this experiment. The blots were scanned using Odyssey imaging system (LI-COR).
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4

Evaluating HDAC6 Inhibitor Tubastatin A

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Tubastatin A was purchased from Selleckchem (Houston, TX, USA). Antibodies to p-STAT3 (Tyr-705), STAT3, p-Smad3 (Ser423/425), Smad3, p-EGFR (Tyr1068), p-NF-κB (Ser536), NF-κB, Histone H3, Acetyl Histone H3 (Lys9), Acetyl α-tubulin (Lys40) and HDAC6 were purchased from Cell Signaling Technologies (Danvers, MA, USA). Antibodies to collagen I (A2), E-cadherin, TGF-βRI, CD68, EGFR, VEGF, CD31 and GAPDH (glyceraldehyde 3-phosphate dehydrogenase) as well as HDAC6 siRNA were purchased from Santa Cruz Biotechnology (San Diego, CA, USA). Antibody to β-actin was purchased from TransGen Biotech (Beijing, China). TNF-α, IL-1β, TGF-β1, MCP-1, IL-6 and TGF-β1 enzyme-linked immunosorbent assay (ELISA) kits were from R&D Systems (Minneapolis, MN, USA). α-SMA, DMSO and other chemicals were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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5

Immunocytochemistry and Immunohistochemistry of TGF-β Signaling

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For immunocytochemistry, serum-starved MEFs were grown on glass slides, treated with TGF-β1, fixed with cold 4% paraformaldehyde (PFA) for 15 min, and then incubated in NH4Cl/PBS (50 mM) for 10 minutes. Cells were permeabilized with 0.25% Triton X-100, blocked in 3% BSA for 30 minutes at room temperature, and incubated with primary antibodies at 4°C overnight. Cells were immunolabeled with the following antibodies: Smad2 (Santa Cruz), Smad3 (Cell Signaling), α-SMA (Sigma), TGF-β RI (Santa Cruz), TGF-β RII (Santa Cruz), and EEA1 (BD Biosciences). FITC- or rhodamine-conjugated secondary antibodies were used, and nuclei were counterstained with Hoechst 33342 (Invitrogen). Mounted cells were analyzed by confocal laser scanning microscopy using a Zeiss LSM Meta 510. For immunohistochemistry, skin samples were fixed in 4% PFA, embedded in paraffin, and sectioned. Sections were heated in DAKO Target Retrieval Solution (pH 6.0) for antigen retrieval, blocked in 5% BSA for 1 hour at room temperature, and incubated with Smad2 (Santa Cruz) primary antibody at 4°C overnight. Samples were incubated with HRP-conjugated secondary antibody and exposed to DAB for colorimetric detection. Nuclei were counterstained with hematoxylin. Mounted samples were analyzed by digital fluorescent microscopy.
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6

Antibody Sources and Targets

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DEN was purchased from Sigma (St. Louis, MO, USA). Antibodies for transforming growth factor-beta receptor (TGF-βR) I, TGF-βRII, phospho-EGFR, and β-actin were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies for phospho-Smad2, phospho-Smad3, Smad2/3, phospho-STAT3, STAT3, phospho-Akt, Akt, phospho-Jak2, Jak2, phospho-Src, and Src were purchased from Cell Signaling Technology (Danvers, MA, USA). Antibodies for proliferating cell nuclear antigen (PCNA), antigen Ki-67 (Ki67), glutathione S-transferase pi (GST-pi) and α-SMA were purchased from Abcam (Cambridge, UK).
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7

Western Blot Analysis of Signaling Proteins

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The protein extracts from the frozen heart tissues and the si-transfected cells were separated by a SDS PAGE (12%) and transferred to nitrocellulose membranes (Bio-Rad, Hercules, CA, USA), followed by the blocking of the non-specific protein with 5% dried milk for 1 h. The blocked membranes were incubated overnight at 4 °C with the primary antibody against IRF3 (cell signaling), TGFβ (Sigma, Burlington, MA, USA), TGFβ-RI, TGFβ-RII, p53, p16, Bax and BCL, and GAPDH (all Santa Cruz). The detection was performed using the suitable horseradish peroxidase-conjugated secondary antibody for 1 h at room temperature in 5% dried milk. The plots were quantified by densitometry and normalized against GAPDH.
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8

Investigating Cellular Responses to Oxidative Stress

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The following compounds were used in this study: DATS (purity > 97%; Shenzhen Minn Bolin Biotechnology Co., Ltd., Shenzhen, China), iodoacetamide (IAM; Nanjing Dingguo Changsheng Biotechnology Co., Ltd., Nanjing, China), and mitomycin (Sigma, St Louis, MO, USA). They were dissolved in dimethylsulfoxide (DMSO) for experiments. DMSO at a concentration of 0.02% (w/v) was set as a vehicle control throughout the studies. Analytical grade 30% hydrogen peroxide (H2O2; Sinopharm Chemical Reagent Co., Ltd., Shanghai, China) was diluted with deionized water to indicated concentrations for experiments. The following primary antibodies were used in this study: α-SMA, α1(I) procollagen, and fibronectin (Epitomics, San Francisco, CA, USA); TGF-βRI, TGF-βRII, PDGF-βR, EGF-R, and Bcl-2 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); cyclin A, cyclin B1, CDK1, CDK2, Bax, pro-caspase-9, cleaved-caspase-9, pro-caspase-8, cleaved-caspase-8, pro-caspase-7, cleaved-caspase-7, pro-caspase-3, cleaved-caspase-3, full-length PARP-1, cleaved-PARP-1, and β-Actin (Cell Signaling Technology, Danvers, MA, USA).
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9

Investigating the Effects of 3-DZNeP

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3-Deazaneplanocin A (3-DZNeP) was purchased from Selleckchem (Houston, TX). Antibodies to EZH2, H3K27me3, p-EGFR, p-Src, Src, p-ERK1/2, ERK1/2, p-STAT3, STAT3, p-Smad3, Smad3, Notch1, MMP2, MMP9, Histone H3 and Cleaved caspase 3 were purchased from Cell Signaling Technology (Dancers, MA). Antibodies to GAPDH, E-cadherin, p-NF-κB (p65), NF-κB (p65), Collagen I (A2), TGF-βRI, Smad7, CD68, CD31, VEGF and EGFR were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). CD3, H3K9me3, TIMP2 and Bcl-2 were purchased from Abcam (Cambridge, MA). Antibody to Bax was purchased from BD Biosciences (San Jose, CA). Antibody to β-actin was purchased from TransGen Biotech (Beijing, China). TNF-α, IL-1β, TGF-β1, MCP-1, IL-6, EZH2, VEGF, CA125 enzyme-linked immunosorbent assay (ELISA) kits were purchased from R&D Systems (Minneapolis, MN). Peritoneal dialysis solution with 4.25% glucose was purchased from Baxter Healthcare (Guangzhou, China). EZH2 siRNA was purchased from GenePharma (Shanghai, China). Lipofectamine 2000 was purchased from Invitrogen (Grand Island, NY). α-SMA, DMSO, CG, Tamoxifen and all other chemicals were obtained from Sigma-Aldrich (St. Louis, MO). Blood urea nitrogen (BUN) and glucose biochemical reagent kits were purchased from Nanjing Jiancheng Bioengineering Institute (Nanjing, China).
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10

Epithelial-Mesenchymal Transition Signaling Assay

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Cell-culture reagents were from Gibco (Grand Island, NY, USA). Lipofectamine and TRIzol were from Invitrogen (Carlsbad, CA, USA). G418 was from Merck (Darmstadt, Germany). Monoclonal antibody to IGFBP-rP1 and recombinant human IGFBP-rP1 protein were from RD (Minneapolis, MN, USA). Mouse monoclonal antibodies to E-cadherin, N-cadherin, TGF-β R I, TGF-β R II, β-catenin, actin, and glyceraldehyde 3-phosphate dehydrogenase (GAPDH) were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Polyclonal antibodies to vimentin, MMP9, Snail, Smad2, P-Smad2, Smad3, and P-Smad3 were from Cell Signaling (Danvers, MA, USA). Recombinant human TGF-β1 was from Peprotech (Rocky Hill, NJ, USA). SB431542 (TGF-β/ALK5/Smad2 inhibitor) was obtained from Sigma.
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