The largest database of trusted experimental protocols

Rat anti mouse cd31 antibody

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Rat anti-mouse CD31 antibody is a laboratory reagent used in various immunological and cell biology applications. CD31, also known as PECAM-1, is a cell surface glycoprotein expressed on the surface of endothelial cells, platelets, and some leukocytes. This antibody can be used to identify and study these cell types in mouse samples.

Automatically generated - may contain errors

9 protocols using rat anti mouse cd31 antibody

1

Immunofluorescence Staining of Frozen Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Frozen tissue sections (5 μm) were fixed with cold acetone for 10 min and allowed to air dry. Sections were blocked with 10% donkey serum (Jackson ImmunoResearch (West Grove, PA, USA) for 30 min at room temperature and incubated with dual NOTA and ZW800-conjugated heterodimer or homodimers overnight at 4ºC. Next, sections were stained with Alexa Fluor488-labeled goat anti-human IgG (H+L) secondary antibody (ThermoFisher Scientific, Waltham, MA, USA) at 4ºC for 2 h. Rat anti-mouse CD31 antibody and Cy3-labeled donkey anti-rat IgG (ThermoFisher Scientific, Waltham, MA, USA) were used for CD31 staining (red). 4′,6-diamidino-2-phenylindole (DAPI; Vector Laboratories, Burlingame, CA, USA) was used to stain cell nuclei, and images were acquired using the Nikon A1R confocal laser microscope system (Melville, NY, USA).
+ Open protocol
+ Expand
2

Immunofluorescence Staining of Tissue Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
Slices of tissue at 5-μm thickness were fixed with cold acetone for 10 min and air-dried for 30 min. After rinsing with PBS and blocking with 10% donkey serum for 30 min at 25 °C, the slides were incubated with 20-nM FITC-labeled Fab conjugates for TF or CD105 staining. Then, rat anti-mouse CD31 antibody (Thermo Fisher Scientific, Carlsbad, CA, USA) and Cy3-labeled donkey anti-rat IgG (Thermo Fisher Scientific, Carlsbad, CA, USA) were used for CD31 staining (red). 4',6-diamidino-2-phenylindole (DAPI; Thermo Fisher Scientific, Carlsbad, CA, USA) was used to stain cell nuclei and confocal fluorescence images were acquired with an Eclipse Ti microscope (Nikon, Melville, NY, USA).
+ Open protocol
+ Expand
3

CD31-Enriched Cell Isolation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
A rat-anti-mouse CD31 antibody (Invitrogen, Carlsbad, CA, USA) was bound to sheep-anti-rat Dynabeads (Invitrogen, Carlsbad, CA, USA) following the manufacturer's instructions. Then, 10 µL of the Dynabead complex was added to the single cell suspension and incubated at 4°C for 1 hour with gentle rotation. Cells bound to the CD31-Dynabead complex were pulled down with a magnet and the supernatants containing unbound cells were collected. Cell supernatants were pelleted at 400 g for 8 minutes at 4°C. CD31-enriched cell pellets were washed 3 times with 1× DPBS. All cell pellets were lysed in RNA Stat-60 solution (Tel Test B Labs, Alvin, TX, USA) overnight at −80°C. Nucleic acids were isolated with chloroform, precipitated with 100% ethanol, and washed with 70% ethanol. DNAse reaction was performed following the manufacturer's suggested protocol (Thermo Scientific, Waltham, MA, USA). RNA was extracted with Phenol/Chloroform (Ambion, Austin, TX, USA) and precipitated overnight in 100% ethanol/160 mM ammonium acetate/0.8% glycogen at −80°C. RNA pellets were resuspended in 10 µL nuclease free ddH2O.
+ Open protocol
+ Expand
4

Immunofluorescence Staining of Tumor Endothelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tumor masses or ‘early EPCs’ were fixed with 4% paraformaldehyde (PFA) in PBS. Sections were prepared from OCT embedded tumor tissues and washed in PBS. After blocking with 1% bovine serum albumin (BSA, Sigma) in PBS, sections were stained with rat anti-mouse CD31 antibody overnight at 4°C, and then with Alexa Flour 647 -conjugated anti-rat antibody (Invitrogen). Fixed cells were stained with FITC-conjugated anti-CD34 monoclonal antibody (GeneTex) and PE-conjugated anti-VEGFR2 monoclonal antibody (BD Biosciences).
+ Open protocol
+ Expand
5

Visualizing Nanobubble Penetration in Tumors

Check if the same lab product or an alternative is used in the 5 most similar protocols
In order to confirm that nanobubbles were small enough to pass through the endothelial gaps in tumors, we used confocal laser scanning microscopy (CLSM) to determine the location of red fluorescently dyed nanobubbles in vivo. Tumor-bearing mice were randomly separated into two groups. One group was injected with DiI-labeled nanobubbles, and the other was injected with DiI-labeled microbubbles. After bubble injection, the heart of each mouse was perfused with 0.9% normal saline until the labeled bubbles were cleared from circulation. The tumors and muscles of the right thigh (used as negative controls because the endothelial cell connections are continuous in skeletal muscles) were immediately extracted and sectioned into 5-μm slices. To visualize the vessels in tumors, slices were incubated with rat anti-mouse CD31 antibody (eBioscience, San Diego, CA) at a dilution of 1:200 overnight at 4°C and then incubated with fluoresceine isothiocyanate (FITC)-conjugated anti-rat secondary antibodies (eBioscience, San Diego, CA). The nucleus was stained with 4′,6-diamidino-2-phenylindole (DAPI). Images were recorded using a laser scanning confocal microscope (TCS SP5, Leica, Germany).
+ Open protocol
+ Expand
6

Tumor Histology and Angiogenesis Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The mice were sacrificed by standard decapitation, and the tumors were harvested, fixed with formalin and embedded in paraffin. 7-µm sections were cut with a paraffin slicing machine, followed by staining with hematoxylin-eosin (H&E) dyes. Tumor apoptosis was also assessed by TUNEL assay according to the product instruction. Slides were stained with rat anti-mouse CD31 antibody (eBioscience, San Diego, CA) to assess tumor blood vessels.
+ Open protocol
+ Expand
7

Quantifying Tumor Vasculature and VEGFR2

Check if the same lab product or an alternative is used in the 5 most similar protocols
At day 10, mice were sacrificed for tumor ex-vivo analysis. After 24-h fixation in a solution of 4 % paraformaldehyde and phosphate-buffered saline, followed by 3-day fixation in 30 % sucrose and phosphate-buffered saline solution (Sigma-Aldrich, St Louis, MO), tumors were sectioned into 10-mm slices for immunofluorescence staining. Rabbit antimouse VEGFR2 antibody (Cell Signaling, Danvers, MA) and rat antimouse CD31 antibody (eBioscience, San Jose, CA) were used to quantity VEGFR2 expression and the percentage blood vessel volume, respectively. Fluorescent microscopy was performed with an LSM510 meta-confocal microscope (Zeiss, Maple Grove, MN) attached to a digital camera (AxioCam MRc, Bernried, Germany) using a × 20 objective. On each histological slice, five fields of view (FOVs) of 0.19 mm2 were randomly selected and the VEGFR2 expression and the percentage blood vessel area per FOV were quantified with ImageJ software (National Institutes of Health, Bethesda, MD) as the average value in the five FOVs.
+ Open protocol
+ Expand
8

Dual Immunofluorescence for VEGFR2 and CD31

Check if the same lab product or an alternative is used in the 5 most similar protocols
After ultrasound imaging, the mice were sacrificed immediately and uterus were harvested for the histological study. Double staining for VEGFR2 and CD31 was performed to confirm co-localization of VEGFR2 on CD31-positive vascular endothelial cells. Briefly, the dissected uterus samples were covered with Tissue-Tek (Sakura), and then frozen in liquid nitrogen vapor. The tissue sections (10 μm) were cut with a cryostat microtome (CM1950; Leica, Heidelberg, Germany) and fixed with pre-cooled acetone for 2 min, followed by drying in air for at least 1 h. Then, the sections were rinsed with PBS for 5 min and incubated with 0.03% H2O2 in PBS, and subsequently blocked with 5% goat serum for 1 h at room temperature. After that, slides were co-incubated with rabbit anti-mouse VEGFR2 antibody (Cell Signaling Technology Inc., Danvers, MA) and rat anti-mouse CD31 antibody (eBioscience, San Diego, CA) at a dilution of 1:200 overnight at 4°C. Cy3-conjugated anti-rabbit (biorbyt, Cambridge, UK) and FITC-conjugated anti-rat secondary antibodies (eBioscience, San Diego, CA) were used to visualize the expressions of VEGFR2 and CD31, respectively. Fluorescent images were acquired at × 200 magnifications with a laser scanning confocal microscope (TCS SP5, Leica, Germany).
+ Open protocol
+ Expand
9

Immunofluorescence Staining of Skin Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fresh mouse dorsal skin tissues were embedded in optimal cutting temperature compound and 6- to 8-μm frozen sections were cut. Then, the frozen tissues or HaCaT cells were fixed in 4% PFA for 15 min. Afterwards, the samples were permeabilized and blocked using blocking buffer (0.2% Triton-X/5% donkey serum) for 1 h. Next, the skin sections were incubated with different antibodies: rat anti-mouse CD4 antibody (1:100), rat anti-mouse CD31 antibody (1:100), and rat anti-mouse F4/80 antibody (1:100), and these antibodies were purchased from eBioscience. HaCaT cells were incubated with rabbit anti-phospho-NF-kB p65 antibody (1:200, Cell Signaling, USA) at 4°C overnight. Anti-rat Alexa 488 (1:200; Invitrogen, USA) and anti-rabbit Alexa 594 (1:200; Invitrogen, USA) were used as the secondary antibody for staining samples 1 h at room temperature. Finally, all samples were stained with 4′,6-diamidino-2-phenylindole (DAPI) for 5 min to visualize nuclei. Fluorescence images were acquired under a fluorescence microscope (Zeiss, Germany).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!