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4 protocols using acetylated α tubulin clone 6 11b 1

1

Antibody Labeling and Tubulin Staining Protocol

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A rabbit polyclonal antibody against DDDDK-tag was used as the anti-Flag antibody (Medical and Biological Laboratories Co., Ltd., Nagoya, Japan). Mouse monoclonal antibodies against α-tubulin (DM1A (epitope; 426–450 residues), NeoMarkers, Fremont, CA, USA), Cy3-conjugated-β-tubulin (both antibodies used for general tubulin staining), and acetylated-α-tubulin (clone 6-11B-1) (Sigma, St. Louis, MO, USA), were used. Human anti-centromere antibody (Antibodies Inc., Davis, CA, USA) was also used. DAPI (4,6-diamidino-2-phenylindole dihydrochloride hydrate) (Sigma), and tubacin (Enzo Life Sciences, Farmingdale, NY, USA) were used. Salicylate (sodium salicylate) was purchased from Sigma. NAP peptide (Biorbit, San Francisco, CA, USA) was aliquoted and stocked as a 1 mM solution in 75% dimethyl sulfoxide at −20 °C.
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2

Immunoblotting Tubulin Isoforms in Sea Urchin

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Immunospecificity of the mAbs raised against chicken α-tubulin (clone N356; Amersham Pharmacia Biotech, Piscataway, NJ. USA), sea urchin (S. purpuratus) acetylated α-tubulin (clone 6-11B-1, Sigma, St. Louis, MO. USA), and sea urchin (S. purpuratus) β-tubulin (clone 2-28-33, Sigma) were diluted 1:1000 in Tris-buffered saline with 1 % Tween-20 (v/v) (TBST). Rabbit anti-Sp-Syn pAb and anti-Hp-ECPN pAbs were diluted 1:1000 and 1:750 respectively in TBST. Rabbit pre-immune serum and mouse pre-immune serum (diluted 1:1000 in TBST) were applied as negative immunoblotting controls in lyophilized 4-arm and 6-arm plutei. The samples were diluted in 0.1 M sample buffer with 2-mercaptoethanol and separated by 10 % uniform sodium dodecyl sulfate-polyacrylamide gel electrophoresis under reducing conditions, blotted to a polyvinylidene difluoride membrane, blocked with 5 % (w/v) skim milk diluted in TBST, and incubated with the above described pAbs or mAbs for 2 h at ambient temperature (AT). The primary antibodies were detected by incubation with alkaline phosphatase (AP)-tagged anti-mouse or rabbit IgG pAbs (Sigma) diluted 1:15,000 in TBST for 2 h at AT and visualized with the chromogenic reagents nitro-blue tetrazolium and 5-bromo-4-chloro-3′-indolyphosphate (Promega, Madison, WI, USA) diluted in AP buffer (pH 9.5) according to the manufacturer’s instructions.
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3

Immunofluorescence Staining of Primary Cilia

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Immunofluorescence staining to observe primary cilia was performed as published previously.25 (link) Briefly, hTERT RPE-1 cells were plated on glass coverslips, transfected, starved and treated for 48 h to induce cilia formation. Cells were fixed using 4% paraformaldehyde (15 min), permeabilized with 0.05% Triton-X (10 min), followed by blocking in 3.75% bovine serum albumin solution (1 h). Primary antibodies for acetylated α-tubulin (clone 6-11B-1, 1:5000; Sigma-Aldrich) and pericentrin (1:5000; Abcam, Cambridge, MA, USA) were applied in blocking buffer for 1 h. AlexaFluor 488 and 546 goat anti-mouse or anti-rabbit secondary antibodies (Life Technologies, Sigma-Aldrich) were subsequently applied for another hour. Cells were counterstained using DAPI (1:4000 of 1 mg/ml stock) and visualized using a Deltavision deconvolution microscope (Applied Precision, Pittsburgh, PA, USA) at × 60 magnification. Images were analyzed using the Imaris 3D software (Bitplane, Concord, MA, USA). All experiments were performed in triplicate and image analyses performed on at least 100 individual cells from each replicate.
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4

Immunofluorescence Staining Protocol

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SMAD2 (L16D3; #3103) and Snail (C15D3; #3879) antibodies were from Cell Signaling Technology. Acetylated α-tubulin (clone 6-11B-1; #T6793) antibody and Phalloidin-Atto 594 (#51927) were from Sigma-Aldrich. Antibody against α-tubulin (DM1A; #CP06) was from Calbiochem, Merck Millipore. Antibodies against p-SMAD2 and p-SMAD3 have been described previously [28 (link), 29 (link)]. Goat anti-Rabbit IgG (H + L) Alexa Fluor 488 conjugate (#A-11008), Goat anti-Mouse IgG (H + L) Alexa Fluor 488 conjugate (#A-11029), and Goat anti-Mouse IgG (H + L) Alexa Fluor 594 conjugate (A-11032) were from Life Technologies. Goat-anti-Rabbit IRDye 800CW (#926-32211) and Goat-anti-Mouse IRDye 680 (#926-32220) were from LI-COR Biosciences.
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