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29 protocols using tp1020

1

Histological Analysis of Microtissue Samples

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Microtissue samples were collected at day 7 and day 14 and fixed overnight using a buffered alcoholic formalin solution (Z-Fix, Anatech). The samples were then infiltrated with paraffin using an automated tissue processor (TP1020, Leica Biosystems, Buffalo Grove, IL), embedded in paraffin blocks and cut into 5 µm sections using a rotary microtome. Deparaffinized and hydrated sections were stained with hematoxylin and eosin (H&E) and mounted using toluene. For immunohistochemistry (IHC), an antibody against endothelial surface marker CD31/PECAM-1 (polyclonal IgG, Santa Cruz) was used at 1:50 dilution. Sections were treated with Proteinase K (Digest-All™, Life Technologies) for 10 min to retrieve antigens and blocked with SuperBlock (Life Technologies) to prevent non-specific antibody binding, and with Peroxidase Suppressor (Life Technologies) to quench endogenous peroxidase. Following primary and HRP-conjugated secondary antibody incubation, diaminobenzidine (DAB; Sigma) was used as a chromogen and hematoxylin for counterstaining. The sections were then mounted and imaged with a brightfield microscope (Nikon).
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2

Tissue Immunohistochemistry for FPR1/FPR2/IL-4Ra

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Tissue preparation was followed by fixation, dehydration, embedding, and staining. Tissues were fixed overnight at 25°C in 4% (v/v) paraformaldehyde (Biosesang, Seoul, Korea) and then underwent tissue processing (TP1020; Leica Biosystems, Wetzlar, Germany), dehydration through a series of graded ethanol baths, wax infiltration, and paraffin embedding (EG1150; Leica Biosystems). Sections (4-μm-thick) were prepared using a microtome (Leica Biosystems) and mounted on poly-L-lysine-coated microscopic slides (Mutokagaku, Tokyo, Japan). After rehydration, slides were blocked with 1% (w/v) BSA for 1 h and incubated overnight at 4°C with 300 μL of primary anti-FPR1/FPR2/IL-4Ra antibodies diluted in DAKO antibody diluent (including 1% [v/v] of the background reducing agent). The next day, secondary antibody was added and the suspensions was held at room temperature for 30 min. After washing with Tween-20 (TTBS), DAPI was added and incubation continued at room temperature for 2 min.
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3

Chondrogenic Differentiation Microbeads

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Microbeads were fixed overnight in buffered zinc formalin (Z-Fix, Anatech Ltd, Battle Creek, MI), embedded in 12 mm diameter collagen gel (3.0 mg/ml) disks and fixed again for 2 h. Disks were then infiltrated with paraffin using an automated tissue processor (TP1020, Leica Biosystems, Buffalo Grove, IL), embedded in paraffin blocks and cut into 6 µm sections using a rotary microtome. To differentiate the acidic mucins indicative of chondrogenesis from neutral mucins, Alcian Blue (AB)-Periodic Acid Schiff’s (PAS) staining was carried out using a commercially available kit (Polyscientific R&D Corp, Bayshore, NY) according to the manufacturer’s protocol. The sections were then imaged with a brightfield microscope (Nikon).
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4

Adipose Tissue Characterization in Mice

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After mice were sacrificed by cervical dislocation, the organs were weighed and rinsed with physiological saline. A portion of the epididymal adipose tissue was fixed in 4% paraformaldehyde for 48 h at 4 °C. The remaining organs were stored at −70 °C. Fixed epididymal adipose tissue was dehydrated by an automated tissue processor (TP1020; Leica Biosystems, Nussloch, Germany) using a series of graded ethanol solutions, embedded in paraffin and cut into 8-μm tissue sections. Sections were stained with hematoxylin and eosin (H&E), and adipose tissue cell morphology was recorded by optical microscopy. The size of adipose tissue cells was estimated by Adiposoft software (National Institutes of Health, Bethesda, MD, USA).
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5

Immunohistochemical Analysis of UCP1 and COX IV

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IngWAT and TA muscles were excised, fixed in 4% formalin, and embedded in paraffin using a benchtop tissue processor (TP1020, Leica Biosystems). Sections of 4 μm thickness were prepared using a microtome (RM2255, Leica Biosystems) and deparaffinized. For immunostaining, endogenous peroxidase activity was blocked by incubation in 3% H2O2, followed by heat‐induced epitope retrieval in 0.01 M sodium citrate. Tissue sections were then incubated with primary antibodies against UCP1 (Thermo Fisher Waltham, MA, USA, PA1‐24894, 1:200) or cytochrome c oxidase subunit IV (Abcam, ab16056, 1:250), and signals were visualized using SignalStain® Boost IHC Detection Reagent (Cell Signaling, 8114) and the SignalStain® DAB Substrate kit (Cell Signaling, 8059).
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6

Histological Analysis of Tonsil Germinal Centers

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Palatine tonsils were fixed in 4% paraformaldehyde for later paraffin embedding using a tissue processor (TP1020; Leica Biosystems, Wetzlar, Germany). Tissues were sectioned at 4 microns and mounted on electrocharged slides. After drying, slides were de-paraffinized in an electric oven at 59°C, re-hydrated in xylene and a series of graded ethanols followed by distilled water. Haematoxylin-eosin staining was performed in order to identify GC morphology in tonsils. A total of four zones in GCs were identified and considered in the expression analysis: The dark zone (DZ), where lymphocytes have a large nucleus and a small amount of cytoplasm; the light zone (LZ), where lymphocytic cells with a higher amount of cytoplasm may be distinguished due to their differentiation; the mantle zone (MZ), consisting of a lymphocyte fringe that surrounds the GC and exhibits an asymmetric distribution regarding the central axis to the follicle; and the interfollicular zone (IZ) as the remaining area excluding the GCs. Finally, the presence of GCs was immunohistochemically confirmed by CD21 labeling and as described below.
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7

Paraffin-Embedding of Mouse Pancreata

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The pancreata of mice were fixed with 4% paraformaldehyde for 2 to 4 hours at 4℃ and washed for 30 minutes with phosphate buffered saline (PBS) at 4℃. Pancreatic tissues were processed with an automatic tissue processor (TP1020; Leica Biosystems, Wetzlar, Germany) and embedded in molten paraffin wax. Paraffin-embedded tissue sections were sliced at a thickness of 4 µm and mounted on adhesive glass slides (081000; Marienfeld, Lauda-Königshofen, Germany).
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8

Histological Evaluation of Muscle Tissue

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Once the muscle tissues were obtained, they were processed by a pathologist using a validated protocol for hematoxylin–eosin staining. The muscle sample was fixed from 24 to 48 h in 10% neutral buffered formalin. The samples were dehydrated in increasing ethanol solutions, cleared in xylol, and embedded in paraffin on an automatic tissue processor (Leica Biosystems, TP1020). Subsequently, 3 μm sections were obtained and stained with the conventional hematoxylin and eosin technique, and then evaluated by light microscopy (Microscope Carl Zeiss Axio Lab.A1).
Patients were grouped according to histological features in connective tissue increased, diffuse and multifocal atrophy, perifascicular atrophy, perivascular inflammatory infiltrate, endomysial inflammatory infiltrate, degenerated fibers, necrotic fibers, basophilic fibers, edema and bleeding, muscle fiber size variation, endothelial hyperplasia, and tumefaction.
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9

Immunohistochemical Analysis of Apoptosis and Vascular Markers

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Whole eyes were fixed in 3.7% paraformaldehyde for 1 day and then processed with a TP1020 tissue processor (Leica Biosystems, Wetzlar, Germany) for the paraffin block. Immunohistochemical staining was performed following the VECTASTAIN ABC Kit protocol (Vector Laboratories, Burlingame, CA). In brief, samples were treated with 0.5% H2O2 to block activity of endogenous hydrogen peroxidase and permeabilized with 0.3% Triton X-100. After blocking for nonspecific binding in 1% normal horse serum for 1 h at room temperature (RT), primary antibodies against cleaved caspase 3 and α-SMA (Abcam, Cambridge, MA) were treated. After washing in PBS (137 mM NaCl; 2.7 mM KCl; 4.3 mM Na2HPO4; 1.47 mM KH2PO4; pH 7.4), the samples were incubated with a biotin-conjugated secondary antibody for 1 h at RT. After washing in PBS, substrate solution was added for 1 h and maintained at RT. To visualize the reactive area in the tissue, the samples were treated with NovaREDTM (Vector Laboratories), counterstained for nuclei with hematoxylin (Vector Laboratories) for 1 min, and then mounted.
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10

Comprehensive Tissue Collection Protocol

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At the end-point of each experiment animals, 200 μl of retro-orbital blood was collected from anesthetized animals and afterwards euthanasia was performed by cervical dislocation. For tissue array, necropsy of animals was performed according to the methods described by the Jackson laboratory. The order of extraction was the following according to the order of tissue autolysis: liver, pancreas, kidney, brain and muscle. Samples extracted were collected in Optimal Temperature Compound (O.C.T) and flash frozen fresh until further use. Before staining, O.C.T. included samples were cut using cryostat (Leica Biosystems CM1520). Alternatively, biological tissues were fixed in 10% neutral buffered formalin (NBF) (20:1 v/v). The 10% NBF was replaced by fresh fixative to eliminate blood and feces from the fixative. After 24h of fixation, tissues were placed in 50% alcohol and processed and embedded in paraffin with an automated tissue processor (Leica Biosystems TP1020, Barcelona, Spain) and an embedding center (Leica Biosystems EG1150H, Barcelona, Spain). Tissues were oriented properly previous to the final embedding in paraffin.
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