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19 protocols using cd45r b220

1

Multiparametric Flow Cytometry for Hematopoietic Stem Cell Analysis

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The following monoclonal antibodies were used: Anti-Lineage, a cocktail containing a concentration optimized mix of the following antibodies: CD3e, Ly6G/Ly6c, CD11b, CD45R/B220, TER-119 (BioLegend, San Diego, CA). Monoclonal Antibodies against CD117 (c-kit), Sca-1, CD127 (IL7R), CD45, KLRG-1, CD25, CD90, CD34, ST2, IL17RB, CCR2, T-bet, Gata-3, and RORgt were purchased from BioLegend. Live/Dead Yellow Fixable Stain, Fixable Viability Dye eFluor 780 or DAPI were utilized to assess viability. Data acquisition and/or cell sorting was performed on a special-order 5-laser BD LSRII flow cytometer, Beckman Coulter Gallios, or BD FACS Aria or Aria II instrument. Purity after sorting was routinely >95%. The analysis was performed using FlowJo software. Mean fluorescence intensities (MFIs) were calculated using the geometric mean of the appropriate fluorescence channel in FlowJo. Expansion Indices were determined using the embedded FlowJo algorithm. For the magnetic separation of hematopoietic stem cells, we used the EasySep mouse CD117 (c-kit) positive selection kit from StemCell Technologies (18757) and we followed the protocol provided by the company.
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2

Spleen Cell Immunophenotyping Protocol

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Spleen cells were processed and analyzed as previously published.20 (link) The following anti-mouse antibodies were used: CD16/CD32 (BD, 2.4G2), CD45.2 (BioLegend, 104, FITC), CD19 (BioLegend, 6D5, PerCP), CD45R/B220 (BioLegend, RA3-6B2, AF647), CD3e (BD, 145-2C11, PE), and CD4 (BD, RM4-5, PB).
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3

Isolation and Purification of Murine Hematopoietic Stem Cells

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The femora and tibiae were harvested from the mice immediately after their sacrifice with CO2. Bone marrow (BM) cells were flushed from bones into Iscove’s modified Dulbecco’s medium (IMDM; Invitrogen) containing 10% FCS, using a 21-guage needle and syringe. Low-density BM mononuclear cells (LDBMMNCs) were separated by Ficoll Hypaque density gradient (Sigma-Aldrich, St. Louis, MO) and washed with IMDM medium.
For flow analysis and cell sorting, BM cells from mice of the indicated genotype were stained with the following antibodies (all from BioLegend, San Diego, CA): Ter119 (#79748), CD45R/B220 (#79752), CD3e (#79751), Gr1 (#79750), CD11b (#79749), Ly-6A/E (Sca1, #108114), CD117 (c-Kit, 105826). Flow cytometric analyses were done using BD LSRII flow cytometer (BD Bioscience). For cell sorting, lineage negative cells were enriched using lineage depletion reagents (StemCell Technologies) according to the manufacturer’s instruction. The Linnegative and LSK populations were acquired by using the FACSAria II sorter (BD Biosciences).
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4

Multicolor Flow Cytometry Analysis

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Cells were stained for extracellular molecular expression patterns using mAbs against mouse CD3 (APC–Cy5 conjugated), CD4 (Pacific Blue conjugated), CD8 (V450 conjugated), CD45R/B220 (PE conjugated), CD11b (PE–Cy5 conjugated), F4/80 (PE–Cy7 conjugated; V450 conjugated), Ly6G (APC conjugated), CD25 (APC conjugated), FOXP3 (PE conjugated), H-2Db (Alexa Fluor-647 conjugated; BioLegend), and H-2Kb/H-2Db (PE conjugated; BioLegend). All antibodies were purchased from BD. The frequency of positive cells was analyzed using a gate that included lymphocytes, granulocytes, and/or monocytes/macrophages. Limits for the quadrant markers were always set based on negative populations and isotype control antibodies. Cells were acquired with a BD FACSCanto II cytometer and analyzed using FlowJo 7.5.3 software. The frequency (percentage) of the analyzed population in the total acquired events was used in the construction of the graphs.
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5

Isolation and Purification of Murine Hematopoietic Stem Cells

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The femora and tibiae were harvested from the mice immediately after their sacrifice with CO2. Bone marrow (BM) cells were flushed from bones into Iscove’s modified Dulbecco’s medium (IMDM; Invitrogen) containing 10% FCS, using a 21-guage needle and syringe. Low-density BM mononuclear cells (LDBMMNCs) were separated by Ficoll Hypaque density gradient (Sigma-Aldrich, St. Louis, MO) and washed with IMDM medium.
For flow analysis and cell sorting, BM cells from mice of the indicated genotype were stained with the following antibodies (all from BioLegend, San Diego, CA): Ter119 (#79748), CD45R/B220 (#79752), CD3e (#79751), Gr1 (#79750), CD11b (#79749), Ly-6A/E (Sca1, #108114), CD117 (c-Kit, 105826). Flow cytometric analyses were done using BD LSRII flow cytometer (BD Bioscience). For cell sorting, lineage negative cells were enriched using lineage depletion reagents (StemCell Technologies) according to the manufacturer’s instruction. The Linnegative and LSK populations were acquired by using the FACSAria II sorter (BD Biosciences).
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6

Isolation of Mouse Neutrophils

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Negative selection of neutrophils from whole bone marrow cells was performed by Magnetic Cell Seperation (MACS; Miltenyi Biotec) according to a previously published protocol, which allows isolation of highly purified primary untouched mouse neutrophils [21 (link)]. Briefly, bone marrow cells were flushed from the femur of mice and stained with the following anti-mouse antibodies (all biotinylated): CD5 (BD Biosciences), CD45R/B220 (Biolegend), CD49b/DX5 (eBiosciences), CD117 (eBiosciences), F4/80 (eBiosciences) and Ter 119 (Biolegend). After incubation the unbound antibodies were washed away. Bone marrow cells were then incubated with magnetic beads (MACS, Miltenyi Biotec, Germany) labeled with streptavidin. Bead coupled bone marrow cells were removed by immunomagnetic separation following the manufacturer’s recommendation resulting in highly purified neutrophils.
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7

Phenotypic Analysis of Splenic Immune Cells

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Splenocyte subpopulations were analyzed by evaluating the relative proportions of Tregs, macrophages, and B cells. Single-cell suspensions of splenocytes were stained with anti-mouse CD4 (BioLegend) and CD25 (eBioscience, Waltham, MA, USA) antibodies to analyze Tregs. To analyze macrophages and their polarization, splenocytes were stained with anti-mouse F4/80 (BioLegend), CD80 (eBioscience), and CD206 (BioLegend) antibodies. Splenocytes were stained with an antibody against CD45R (B220; BioLegend) for B cell detection. To eliminate nonspecific staining, isotype- control antibodies, matched to the surface marker antibody’s host species and class, were used. FACS analysis was performed using a BD FACSCanto II and BD FACSVerse flow cytometers (BD Biosciences, San Diego, California, USA). Data collected were analyzed with FlowJo software (Tree Star, Inc., Ashland, Oregon, USA).
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8

Fluorescent Conjugation of Food Antigens

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Food antigens [cow’s milk (Organic Valley Family of farms), and egg (Jay Robb Enterprises Inc) and ovalbumin) were conjugated to Alexa Fluor 647 dye as described by the manufacturer (ThermoFisher Scientific). The model antigens and inhibitors used were as follows: dextran, tetramethylrhodamine, 10,000 MW, lysine fixable and diamidino-2-phenylindole (DAPI) (ThermoFisher Scientific); 8-Br cADPR (Sigma); Tropicamide (SantaCruz); LY294002 (Cell signaling). The reagents used are as follows: Fluo4 AM and Imject Alum Adjuvant (ThermoFisher Scientific); RU486, polybrene, tamoxifen, carbachol, histamine and ovalbumin (Sigma Aldrich), human and mouse IL-13 (PeproTech), and mouse anti-IgE antibody, clone EM-95 (provided by Fred D. Finkelman at CCHMC). Antibodies that we used are as follows: Chromogranin A (Immunostar), MMP7 (R&D systems), mouse MCPT-1 (eBioscience), MUC2, STAT6, IL-4Rα, phospho-STAT6 (SantaCruz), phospho-AKT (Ser473) and phospho-AKT (Thr308) (#9275, Cell Signaling), actin (A2066, Sigma), DCLK1 and anti-GFP (Abcam), PerCP-Cy5.5 conjugated CD45R/B220, CD8, Ly-6G/Ly-6C, CD11c, and CD3e, PE/Cy7 conjugated ckit, biotin conjugated ST2 (BioLegend), streptavidin conjugated APC-Cy7 (BD Pharmigen), and APC conjugated FcϵR (BioLegend), Donkey anti-mouse, -rat, -rabbit & -goat conjugated to Alexa Fluor-488 or −647 (Invitrogen).
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9

Immune Cell Profiling in Murine Tumor Model

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To analyze the immune cell components, spleens and tumors of MFC tumor-bearing mice were sampled. Spleen lymphocytes were prepared as described by Li et al. (2020) (link). Briefly, fresh spleen was gently scraped with sterile cover glasses in PBS and the cells were filtered with a 70 µm strainer after erythrocytes were lysed. Tumor tissue was dissociated into single-cell suspensions according to the protocol of the Tumor Dissociation Kit (Miltenyi Biotec, cat: 130-096-730). Single cells were stained with fluorescein-conjugated monoclonal antibodies for 30 min at 4°C, and subsequently analyzed on Flow Cytometer (Cytek Aurora 3,000). The monoclonal antibodies include CD45 (Biolegend, cat: 103138), CD3 (Biolegend, cat: 100210), CD4 (Thermo, cat: 48-0041-82), CD8 (BD Pharmingen, cat: 557959), CD25 (Biolegend, cat: 102008), PD-1 (Biolegend, cat: 109118), NK1.1 (Biolegend, cat: 108710), CD11b (Biolegend, cat: 101228), Gr-1 (Biolegend, cat: 108426), CD19 (Biolegend, cat: 115543), CD45R/B220 (Biolegend, cat: 103244), CD11c (Biolegend, cat: 117348), F4/80 (Biolegend, cat: 123118), and MHC-Ⅱ (Biolegend, cat: 107643).
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10

Quantification of Immune Cell Subsets

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Eight days after adoptive transfer and infection one third of the spleens was fixated in 4% formaldehyde for two hours, dehydrated in 30% sucrose for 24 hours and frozen with liquid nitrogen in Tissue-tek O.C.T. compound (Sakura Finetek Europe; Alphen aan den Rijn, Netherlands). On glass slides cryostat sections of 7 μm thickness were blocked with 5% BSA (Sigma-Aldrich) for 30 minutes, followed by staining with PE conjugated CD90.1 antibody diluted 1:500, FITC conjugated CD45R/B220 antibody and APC conjugated CD4 antibody both diluted 1:200 in 5% BSA, containing DAPI (all from BioLegend) diluted 1:8000. After one hour the slides were washed with PBS three times for three minutes and mounted with mounting medium (PermaFlour by Thermo Scientific, ThermoFisher). Images were taken at an Axioplan 2 fluorescence microscope at 20x magnification using an AxioCam camera and Axiovision LE software Rel. 4.9 (all Axio devices were from Zeiss, Oberkochen, Germany). Stitching as well as computational cell detection and counting were performed in QuPath-0.2.3 (University of Edinburgh). Single cells were identified by DAPI signal and B cells, CD4 T cells and SMARTA CD4 T cells by their respective fluorescence coupled antibody (FITC/B220, APC/CD4 and PE/CD90.1). B cell zones were marked manually, and cell numbers counted computationally.
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