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3 protocols using irdye 800 goat antirabbit

1

Quantitative Western Blot Analysis

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Western blot analysis was performed as described previously with minor modification.16 (link),28 (link) For cPLA2 expression, primary antibodies included mouse monoclonal anti-cPLA2 antibody (1:100; Santa Cruz Biotechnology, Santa Cruz, CA), polyclonal rabbit anti–phospho(p)-cPLA2 antibody (1:500), and mouse anti–β-tubulin antibody (1:1,000; Sigma). For active caspase-3 and poly(adenosine diphosphate ribose) polymerase (PARP) expression, primary antibodies included rabbit anti–caspase-3 antibody (cleaved, 1:1,000), rabbit anti–PARP-1 (cleaved, 1:500), and mouse anti–β-tubulin antibody (1:1,000; Sigma). For extracellular signal-regulated kinase (ERK) expression, primary antibodies included polyclonal rabbit anti-ERK1/2 antibody (1:1,000) and monoclonal mouse anti–p-ERK1/2 antibody (1:2,000). Secondary Alexa Fluor 680 goat antimouse (1:10,000; Invitrogen, Grand Island, NY) and IRDye 800 goat antirabbit (1:5,000; Rockland, Gilbertsville, PA) antibodies were used. The Western blot was imaged and quantified using a Li-Cor Odyssey Infrared Imaging system (LI-COR Biosciences, Lincoln, NE) according to the manufacturer's instruction.
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2

Histone Extraction and Western Blot

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The cells were lysed in Lysis buffer (30 mM Tris pH 8.0, 150 mM NaCl, 0.1% SDS, 0.5% Na-deoxycholate, 0.1% NP-40, Proteinase Inhibitor tablet (Roche)) and total histones were extracted as previously described (27 ). Western blotting assays were performed according to the manufacturer’s manual (Bio-Rad). The primary antibodies used are against: FLAG-tag (Sigma, F1804), H1.2 (Abcam, ab4086), H1.3 (Abcam, ab24174), phospho-H1.4 (Sigma, H7664), H1.5 (Abcam, ab24175), H1.0 (Santa Cruz, sc-56695), beta-actin (Sigma, A5441). The secondary antibodies are: IRDye680 Goat anti-Rabbit (Li-COR, 926–32221), IRDye800 Goat anti-Rabbit (Rockland, 611-0132-122) or Goat anti-Mouse (Molecular Probes, A21058). Signals were visualized using Odyssey Infrared Imaging System (LI-COR Biosciences).
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3

Western Blot Protein Detection

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The cells were lysed with RIPA buffer containing 0.1% SDS, 1% Triton-X 100, 10% glycerol, 150 mM NaCl, 0.05% Na-Doc, 5 mM EDTA (pH 8.0), 30 mM Tris-HCl (pH 7.4), protease inhibitor mixture (Thermo Fisher Scientific) and phosphatase inhibitors (Roche). After centrifugation (12,000 rpm, 4°C, 15 min) to remove cell debris, the protein suspension was collected and separated by SDS-PAGE. Then, the target proteins were transferred onto PVDF membranes (Millipore Durapore, 0.45 μm pore size). The membranes were washed, blocked and incubated with the specific primary antibodies (1:1000). The secondary antibody was IRDye 800 goat anti-rabbit or IRDye 700 goat anti-mouse (Rockland). Finally, the fluorescence signal of blots was detected using the Odyssey Infrared Imaging System (LI-COR, Lincoln, USA).
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