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Padeasy vector

Manufactured by Agilent Technologies

The PAdEasy vector is a lab equipment product from Agilent Technologies. It is designed for the cloning and expression of recombinant proteins. The vector provides a convenient and efficient system for the generation of adenoviral constructs.

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4 protocols using padeasy vector

1

Generation of FoxO1 and GFP Overexpression Adenoviruses

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To make FoxO1 and GFP overexpression adenoviruses, mouse FoxO1 and GFP coding sequences were first subcloned into a pShuttle-IRES-hrGFP-2 vector (Agilent) and then transferred to pAdEasy vector (Agilent) as described earlier50 (link). The constructs were digested by enzyme PacI (NEB, R0547) and then transfected into human embryonic kidney (HEK) 293A cells for adenoviral production. To make short hairpin RNA (shRNA) adenovirus to knock down Foxo1, a gene-specific shRNA (top strand: 5’ GAGCGTGCCCTACTTCAAGGA) was designed using an online tool (BLOCK-iT, Life Technologies). The hairpin-encoding oligonucleotides were cloned in vector pENTR/U6 (Life Technologies), which was recombined with pAd/BLOCK-iT vectors. The positive clones were used for transfection of HEK293A cells to make adenoviruses, as previously described51 (link).
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2

Generation of FoxO1 and GFP Overexpression Adenoviruses

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To make FoxO1 and GFP overexpression adenoviruses, mouse FoxO1 and GFP coding sequences were first subcloned into a pShuttle-IRES-hrGFP-2 vector (Agilent) and then transferred to pAdEasy vector (Agilent) as described earlier50 (link). The constructs were digested by enzyme PacI (NEB, R0547) and then transfected into human embryonic kidney (HEK) 293A cells for adenoviral production. To make short hairpin RNA (shRNA) adenovirus to knock down Foxo1, a gene-specific shRNA (top strand: 5’ GAGCGTGCCCTACTTCAAGGA) was designed using an online tool (BLOCK-iT, Life Technologies). The hairpin-encoding oligonucleotides were cloned in vector pENTR/U6 (Life Technologies), which was recombined with pAd/BLOCK-iT vectors. The positive clones were used for transfection of HEK293A cells to make adenoviruses, as previously described51 (link).
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3

Quantitative Analysis of Adenoviral DNA

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Total DNA was isolated from finely minced tissues (∼20 mg of liver, pancreas, brain and ∼15 mg of spleen) by using DNeasy 96 Blood & Tissue Kit from Qiagen, USA following the manufacturer’s guideline. Quantitive real time PCR was performed to determine the copy number of adenoviral genomic DNA in liver, pancreas, brain and spleen by using iTaq™ Universal SYBR® Green Supermix from Bio-Rad, USA. The following primers were used based on a previous study [30 (link)]. The sequences of the forward and reverse primers were 5’-CCACCGATAGCAGTACCCTT-3’ and 5’-GACCAGTTGCTACGGTCAAA-3’, respectively. The PCR cycle consists of one cycle of 95°C for 3 min and then 40 cycles of 95°C for 10 s, 55°C for 10 s and 72°C for 30 s and one cycle of 95°C for 10 s. Purified pAdEasy vector (Agilent Technologies) with known copy number (2.2X106 to 2.2X10-1 copy) was used to prepare the standard curve for the determination of Ad viral DNA copy number in the samples. Each sample and standard were run in triplicate. A Bio-Rad CFX connect PCR detection system was used for real time PCR and data was anlyzed by Bio-Rad CFX manager. A negative control using molecular biology grade water (ThermoFisher Scientific, USA) instead of DNA template was included and the quantification cycle (Cq) values less than the negative control were considered as negative.
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4

Generating Adenoviral Overexpression and Knockdown Constructs

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To make Sesn3, Sin1, and GFP overexpression adenoviruses, mouse Sesn3, Sin1, and GFP coding sequences were first subcloned into a pShuttle-IRES-hrGFP-2 vector (Agilent) and then transferred to pAdEasy vector (Agilent). The constructs were transfected into human embryonic kidney (HEK)293A cells for adenoviral production. To make short hairpin RNA (shRNA) adenoviruses, gene-specific target shRNAs were designed using an online tool: BLOCK-iT (Life Technologies). The corresponding DNA oligonucleotides were synthesized (Integrated DNA Technologies) and cloned in a pENTR/U6 vector (Life Technologies). The pENTR/U6 constructs were recombined with pAd/BLOCK-iT vectors. The positive clones were used for transfection of HEK293A cells to make adenoviruses, as previously described (38 (link)). The sequences for the oligonucleotides used are included in Supplementary Table 1.
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