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The SNU423 is a laboratory instrument designed for cell culture applications. It functions as an incubator, providing a controlled environment for the growth and maintenance of cells. The SNU423 allows for the regulation of temperature, humidity, and gas composition to support optimal cell culture conditions.

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57 protocols using snu423

1

Establishment of AR knockdown cell lines

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The human HCC cells were maintained in DMEM (Invitrogen, Grand Island, NY) with 10% fetal bovine serum (FBS), 1% Glutamine, and 1% penicillin/streptomycin. NK-92MI cells (ATCC, Manassas, VA) were maintained in α-MEM (Invitrogen) with 0.2 mM inositol, 0.1 mM 2-mercaptoethanol, 0.02 mM folic acid, horse serum to a final concentration of 12.5% and FBS to a final concentration of 12.5% based on ATCC guidelines. All cell lines were cultured ina5%(v/v) CO2 humidified incubator at 37 °C The SK-Hep1 (ATCC, Manassas, VA) and SNU423 (ATCC, Manassas, VA) AR stable transfectants were established based on a previous procedure [14 (link)]. Cisplatin (479306), MG132 (M8699) and Cycloheximide (CHX, 227048) were purchased from Sigma.
To generate AR knock-down stable clones of SK-Hep1 (ATCC, Manassas, VA) and SNU423 cells (ATCC, Manassas, VA), HEK-293T cells were transfected with lentiviral vectors, pLKO1-sh-AR/pLKO1-scr, with the psAX2 packaging plasmid, and pMD2G envelope plasmid for 48 hrs to obtain the lentivirus supernatant, which was frozen at −80 °C for later use.
For the luciferase reporter assay, cells were transfected using Lipofectamine 3000 (Invitrogen) reverse transfection protocol, according to the manufacturer's instructions. See Supplemental data for detailed sequence information.
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2

Authenticated Cell Line Protocols

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Cell lines used in these experiments were obtained from the following sources and were cultured according to conditions specified by the respective cell banks. The following cell lines were obtained from ATCC: Hep3B (HB-8064), SNU-475 (CRL-2236), SNU-423 (CRL-2238), and A549 (CCL-185). KYSE-150 (ACC 375) and KYSE-30 (ACC 351) were purchased from DSMZ and TE4 (RCB2097) was purchased from RIKEN. The cell lines listed above were tested for mycoplasma and were negative. Cells were authenticated by STR method or vendor protocols. All 313 cell lines in the CRIPSR pooled screen were purchased from commercial vendors and were STR authenticated and mycoplasma negative. A broad panel of cancer cell lines was screened in the Eurofins Oncopanel. All cells in this panel were mycoplasma negative and STR verified.
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3

Cell Line Authentication and Characterization

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Human HCC and PCa cell lines HepG2, PLC/PRF/5, SNU-423, VCaP, 22Rv1, DU145 and the immortalized normal liver cell line THLE2 were obtained from American Type Cell Culture Collection (ATCC, Manassas, VA). For reproducibility experiments, HCC cells panel (HepG2/C3A, PLC/PRF/5, SNU-423, SNU-475) was obtained from ATCC (ATCC® TCP-1011). The read pairs covering exon 4–8 of the AR locus from SNU-475 cell whole genome sequencing are summarized in Supplementary Figure 1A (details in Supplementary Methods). HCCLM3 cells were kindly provided by Thomas Schmittgen, University of Florida. Cell lines have been tested and authenticated by Genetica Cell Line Testing (Burlington, NC) using short tandem repeat DNA profiling. All cells were tested for mycoplasma periodically using MycoAlert™ PLUS Mycoplasma Detection Kit (LT07–705, Lonza, Allendale, NJ) and were negative. Cells were sub-cultured in ATCC recommended medium, DMEM or RPMI-1640 (11995–065, 11875–093, Invitrogen, Carlsbad, CA) supplemented with 10% fetal bovine serum (F0926–500ML, Sigma-Aldrich, St. Louis, MO) at 37°C in a humidified atmosphere with 5% CO2. Phenol-red free media containing 5% charcoal-stripped fetal bovine serum (csFBS) were used for studies involving steroid hormone signaling (21063–029, 11835–030, Invitrogen, Carlsbad, CA).
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4

Validated Hepatoma Cell Line Characterization

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SNU387, SNU423, SNU475, Huh7, PLC/PRF/5 (HCC), HepG2 (Hepatoblastoma) and SKHep1 (adenocarcinoma of liver) were purchased from ATCC. Hep40 cells (HCC) were kindly provided by Prof. M. Ozturk (IBG, Izmir, Turkey). Cells were propagated in DMEM (PAA) supplemented with 10% FCS, Penicillin/Streptomycin (50 U/ml) and 2 mM L-Glutamine in a humidified, 5% CO2 incubator. The authenticity of Hepatoma cell lines were validated by STR analysis (Eurofins, Germany) and sequencing of p53 cDNA as they contain different p53 mutations12 (link). MycoAlert Mycoplasma Detection Kit (Lonza) has been used routinely to check mycoplasma contamination. Full-length human ZEB1 and ZEB2 cDNA were cloned into pCDNA4 plasmid with N-terminal HA-tag and sequence verified. E-Cadherin promoter luciferase reporter was used as described before11 (link). Transfections were performed using Lipofectamine LTX reagent (Invitrogen). Where necessary, cells were treated with TGFβ (R&D systems), UCN-01 and Midostaurin (Enzo Lifesciences), Oxaliplatin (Hospira, UK) and Sorafenib (Bayer, UK). All other chemicals were obtained from Sigma. Small hairpin RNA constructs (control and validated PKCα targeting, TRC no: TRCN0000195322-PKC-sh-1 and TRCN0000001693-PKC-sh-2) were purchased from Sigma.
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5

Culturing Human Hepatocellular Carcinoma Cell Lines

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The human HCC cell lines HepG2, Hep3B, SNU387, and SNU423 were obtained from ATCC. HepG2 and Hep3B cell lines were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM; Mediatech, Inc.) supplemented with 10% fetal bovine serum (FBS; Atlanta Biologicals). SNU387 and SNU423 cell lines were cultured in RPMI 1640 medium (Corning) with 10% FBS. All cell lines were cultured at 37°C in a humidified atmosphere of 5% CO2.
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6

Cell Line Cultivation and Normal Liver Cell Preparation

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The cell lines HepG2, SNU-387, SNU-423, and SNU-475 were purchased from ATCC (Manassas, VA). HepG2 cells were cultured in DMEM high-glucose medium (MilliporeSigma), and SNU-387, SNU-423, and SNU-475 cells in RPMI-1640 (MilliporeSigma). Culture media were supplemented with 10% fetal bovine serum, 100 U/mL penicillin, and 100 µg/mL streptomycin. Cells were grown at 37°C in 5% CO2. Normal human liver cells (ABM-T0051; Applied Biological Materials, Richmond, BC, Canada) were stored at -80°C. Before use, the liver cells were quickly thawed in a 37°C water bath. The resulting cell suspension was transferred into cold culture medium (Hepatocyte Culture Medium BulletKit [CC-3198]; Lonza, Walkersville, MD) and then centrifuged at 150g for 5 minutes at 4°C. Thereafter, the cell pellet was suspended in hepatocyte culture medium.
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7

Comprehensive Liver Cell Line Protocol

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Human HCC cell lines, Hep3B, Huh7, PLC/PRF/5, SNU‐398, SNU‐423, SNU‐449, SNU‐761, and SNU‐878, and a human hepatoblastoma cell line, HepG2, were purchased from ATCC (Manassas, VA) or Korean Cell Line Bank (Seoul, Korea). Normal liver epithelial cell line Chang was purchased from CLS Cell Line Service (Eppelheim, Germany).
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8

Circulating circRNA LRIG3 in Hepatocellular Carcinoma

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A total of 130 paired surgically excised HCC and adjacent normal tissues from Henan Provincial People’s Hospital (Zhengzhou, China) were immediately collected into liquid nitrogen to preserve the integrity of the RNA. In addition, plasma samples from 36 HCC patients and 36 healthy controls were also collected to test the non-invasive diagnostic value of circ-LRIG3. None of the patients received preoperative radiotherapy or chemotherapy, and they all provided written informed consent. This study was conducted with the approval of the ethics committee of Henan Provincial People’s Hospital. Six HCC cell lines including SNU-423, HepG2, Hep3B, Huh7, SMMC-7721 and MHCC-97 L and one normal LO2 hepatocytes were all purchased from ATCC and cultured in DMEM medium containing penicillin/streptomycin and 10% fetal bovine serum.
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9

Culturing Hepatocellular Carcinoma Cell Lines

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Clone9, N1S1, Hep3B, HepG2, PLC/PRF/5, SNU-387, SNU-423, SNU-449, SNU-475 (ATCC, Manassas, VA), AS30D (DSMZ, Braunschweig, Germany) and HuH-7 (JCRB Cell Bank, Japan) cell lines were cultured according to supplier recommendations.
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10

Human Liver Cancer Cell Culture

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Human liver cancer cell lines (Bel-7402, QGY-7701, Chang liver, SNU-423, SMMC-7721, LM3, MHCC97-L, MHCC97-H, HepG2) and the normal liver cell line LO2 were purchased from ATCC and cultured in DMEM supplemented with 10% FBS and 1% penicillin/streptomycin at 37 °C in a humidified incubator of 5% CO2.
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